Gene Tcr_0310 details

Gene Information

• Locus tag: Tcr_0310
• Symbol: rplF
• ID: 3762532
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Thiomicrospira crunogena XCL-2
• Kingdom: Bacteria
• Replicon accession: NC_007520
• Strand: +
• Start bp: 353607
• End bp: 354140
• Gene Length: 534 bp
• Protein Length: 177 aa
• Translation table: 11
• GC content: 38%
• IMG OID: 637785019
• Product: 50S ribosomal protein L6
• Protein accession: YP_390580
• Protein GI: 78484655
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0097] Ribosomal protein L6P/L9E
• TIGRFAM ID: [TIGR03654] ribosomal protein L6, bacterial type

Plasmid Coverage information

• Num covering plasmid clones: 15
• Plasmid unclonability p-value: 0.000340261
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCAAGAA TTGCAAAATC TCCTATTACT TTACCATCTG GTGTAGATGT AACGATTAAT 
GGAACTGATG TATCTGTAAA AGGATCCAAA GGTGCATTGT CTAAAACATT TAACCATGCT 
GTTTCAGTAT CTCTAGAAGA CGGTGTTGTA ACAGTAGCGC CGAAAAACGA AAGTAAGAAT 
GCATGGGCAC AAGCTGGTAC AGCGAGATCT ATCATTAATA ATATGGTGTT AGGTGTTACT 
GAAGGATTTG AAAAGAAATT ACAATTGGTC GGTGTTGGTT ATAGAGCACA GGCACAAGGT 
AAAGTACTTA ACTTAACGTT AGGTTTTTCT CATCCAGTCA ATCATGAGCT ACCTGAGGGT 
GTGACGGTTG AAACACCAAG CCAGACTGAA ATCGTAGTTA AAGGCGCAGA TAAGCAAGTT 
GTTGGACAGG TTGCTGCTGA AATTCGTGGG TATAGACCTC CTGAACCTTA TAAAGGTAAA 
GGTGTTAAAT ATGCTGATGA ATATATCTTG CGTAAAGAAG CTAAGAAAAA ATAA 

 

Protein sequence

MSRIAKSPIT LPSGVDVTIN GTDVSVKGSK GALSKTFNHA VSVSLEDGVV TVAPKNESKN 
AWAQAGTARS IINNMVLGVT EGFEKKLQLV GVGYRAQAQG KVLNLTLGFS HPVNHELPEG 
VTVETPSQTE IVVKGADKQV VGQVAAEIRG YRPPEPYKGK GVKYADEYIL RKEAKKK