| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tcr_0250 |
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| Symbol | |
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| ID | 3761515 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thiomicrospira crunogena XCL-2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007520 |
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| Strand | + |
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| Start bp | 300179 |
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| End bp | 302290 |
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| Gene Length | 2112 bp |
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| Protein Length | 703 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 637784955 |
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| Product | type II and III secretion system protein |
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| Protein accession | YP_390520 |
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| Protein GI | 78484595 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1450] Type II secretory pathway, component PulD |
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| TIGRFAM ID | [TIGR02517] general secretion pathway protein D |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 0.980463 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAAATG TGAAACTTAT TTTATGGTTC TGTTTAATGG GCCTTAGCAT CAATGGGCAT
GCGCAACCAG AATCTCAGTC AGAAGAAGTG ACCTTGAAAC AGAACTTTCA ACAAGCGGAT
ATAGAAAAAG TTATCGAGGC CGTCGCAAAA CTGACAGGTA AAAATTTCAT TATTGATCCA
CGCGTAAAAG GAAAGGTTAC GCTGATTGCT CCAGAAGCCA TGCCCCCTGA AGATTTATAT
GAAACATTGT TAGCGATTTT ACATGTCCAT GGCTATGTGG CTATTCCAGG AAAAACCGCG
ATTCAAATCA TTCCAGCCAA TTTAGCAAGG GATCAAGTCC CATATGAAAA TCCTAGTGCT
CAGCAAAGTG ACTGGGTGAC GGAAGTCATT ACCATCGAAA AAGTGCCGGC CACAAAACTG
GTTGCCGTAC TCAGACCTCT TGTTGCCAGA GAAGGACACT TGGTTGCCTT ATCTGAAAGT
AATCGAATGA TTGTGACCGA TAGCCAGTCG AATATTGCTA GGCTGAAACA AGTTATCAAA
AGAGTGGATG TGGACGAATC AAGTGGTTAT GAAGTGATTA AATTATCACA TGCCTCCGCT
GAAGAAATGA TGTTGGTGAT TAAAAAAGTC ATGTCCAAAT CGGCTAATAA GCAATTTAAT
GTGTCATTTG ATGAGCGCTC TAACCGAGTC ATTTTGTCGG GTGATCAAGA CACGCGGCGC
GAGATGCGTG CTTTAATTGC AGATTTAGAT GTCTCTGTTC CTTCTGAAGG CCGAGTTCAA
GTCATTTATC TGCACTATGC CAAAGCCGCT GAGTTGGTTC CCGTATTGCA AAAAATTGCC
ACCAATCGAT CTTTGTTGAG CAGTGTCAGT TCAGATGCCA AAACAAGTGA AGCGACCATT
CCCGATGCAA CTGGGAATGG TGTTCAGGTG AATCAGCTGG ATGATAAAAC CTTAAAATCC
CGAATCAGTA TTGAAGCGGA AGAACGCATG AATGCCATCA TTATCAGTGC GCCACCCGGT
GTTGTTTCAG TGTTGAAAAC AGTCATTAAG CAGTTGGATA TCCGTCGTGC ACAGGTGTTG
ATCGAGGCGA TTCTGGTTGA AGTCACAGAA ACCAAGCAGG CCGAATTAGG GGTTGAGTGG
GGCGCTGCCG GACCGAATGG GGTGGGCTTA ATTAACTTTT CAGGAACGAT CCCAACCATT
ATTGGGAATG CTGGAAATCC TGCCGCACAA GCCAATGCCA TAGGCACAGG GGTGAATGCC
GCTTTCGGAG AAGTTAGTGC TGATGGAACG GGCTGGGGGG CATTGATTCG CGCGTTAAAC
AGTGATTCTG AAGCGAACAT CTTATCCACT CCGACTTTGT TAACACTCGA CAATGAAGAA
GCGGAAATTG TTGTCGGTAA AGAGGTCCCG TTTCAAACAG GTTCTTATAC CTCCACGGGC
ACGTCAAGCA CGCCAACGAA TCCATTCAAT ACCATCGAGC GAAAAAACGT TGGGTTGAGC
CTGAAGGTCA CGCCTCAAAT CAATGAAGGG GATGAGGTTT TCTTGGAAAT CAATCAAGAA
ATTTCCGACG TCATTCCAAA AGGCGATGCC GTGGATGTTC AAACGTCAAA ACGACAAATC
AAAACGCGGG TGATTGTCGG TGACGGTAAC GTTATTGTGC TGGGTGGATT GTTAACGGAA
AAAGAAACGG AAGTGGAGAA AAAAGTACCA GGCCTGGGCG ATATTCCAGG ATTAGGTGCA
CTTTTCCGCT CCACCAGTAA TGAACGAGAA AAAGTGAATT TAATGGTGTT CCTACGCCCA
GTGATTGTTC GGGATAATAA GATGGGCACC TATTACAGCC GGAAAAAATA TTCTCTAATC
CGCAATGAGC AGACGCAGTT ATTGAAAAAG GACTCAGGAC TCTTGGAAGG ATTACGTCCT
AGAATGCCAA CGTTAGAGCA ATGGAAAAAT ATGGAATCAG CAAAATCATT TGATCCTTCA
GAGCCTGAAG AGACCGCTTC CAGCGTTGAG CCAAAAGCGG TTAACGAAAC AGAAAAGAAA
ACTGAACAAC AAATCGAAGA GCAACCGTCT ACAAGCGACT CTATGCCTTT GAAAGAGTTT
GACGATTTAT GA
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| Protein sequence | MKNVKLILWF CLMGLSINGH AQPESQSEEV TLKQNFQQAD IEKVIEAVAK LTGKNFIIDP
RVKGKVTLIA PEAMPPEDLY ETLLAILHVH GYVAIPGKTA IQIIPANLAR DQVPYENPSA
QQSDWVTEVI TIEKVPATKL VAVLRPLVAR EGHLVALSES NRMIVTDSQS NIARLKQVIK
RVDVDESSGY EVIKLSHASA EEMMLVIKKV MSKSANKQFN VSFDERSNRV ILSGDQDTRR
EMRALIADLD VSVPSEGRVQ VIYLHYAKAA ELVPVLQKIA TNRSLLSSVS SDAKTSEATI
PDATGNGVQV NQLDDKTLKS RISIEAEERM NAIIISAPPG VVSVLKTVIK QLDIRRAQVL
IEAILVEVTE TKQAELGVEW GAAGPNGVGL INFSGTIPTI IGNAGNPAAQ ANAIGTGVNA
AFGEVSADGT GWGALIRALN SDSEANILST PTLLTLDNEE AEIVVGKEVP FQTGSYTSTG
TSSTPTNPFN TIERKNVGLS LKVTPQINEG DEVFLEINQE ISDVIPKGDA VDVQTSKRQI
KTRVIVGDGN VIVLGGLLTE KETEVEKKVP GLGDIPGLGA LFRSTSNERE KVNLMVFLRP
VIVRDNKMGT YYSRKKYSLI RNEQTQLLKK DSGLLEGLRP RMPTLEQWKN MESAKSFDPS
EPEETASSVE PKAVNETEKK TEQQIEEQPS TSDSMPLKEF DDL
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