Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Tcr_0244 |
Symbol | |
ID | 3761509 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Thiomicrospira crunogena XCL-2 |
Kingdom | Bacteria |
Replicon accession | NC_007520 |
Strand | + |
Start bp | 291921 |
End bp | 293909 |
Gene Length | 1989 bp |
Protein Length | 662 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 637784949 |
Product | transketolase |
Protein accession | YP_390514 |
Protein GI | 78484589 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG0021] Transketolase |
TIGRFAM ID | [TIGR00232] transketolase, bacterial and yeast |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.0000000179813 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCAACTC GTAGAGAACT TGCTAATGCG ATTCGTGTCT TGAGCATGGA CGCAGTACAA AAAGCTAAAT CTGGTCATCC AGGTGCACCG ATGGGTATGG CTGATATTGC CGAAGTCCTG TGGAATGACC ACATGAAATA TAACCCAACA AATGCAAATT GGGCTGATCG TGACCGTTTC GTTTTATCAA ACGGCCATGG TTCGATGCTG ATTTATTCTT TGTTGCACTT AACAGGCTTT GATCTAAGTA TTGACGATAT TAAAAACTTC CGTCAATTGC ACGCTAAAAC AGCGGGTCAC CCAGAGTACG GTTATGCCGA TGGTATTGAA ACAACAACAG GTCCTTTAGG TCAGGGGCTT ACGAATGCTG TTGGTATGGC GATCGCAGAG CGCACGTTAG GCGCTCAGTT CAACAAGCCT GGTCACAACA TCGTTGATCA CAATACATAT GTTTTCATGG GTGACGGTTG TTTGATGGAA GGTCTGTCTC ATGAAGCGGC AGCGATGGCA GGAACTCTAG GTCTTGGGAA GTTAATTGCT TTCTGGGATG ATAACGATAT TTCTATCGAT GGTCATATCG GTGACTGGAT GGAAAAAGGT GTTCCTGGTC GCTTCAAGTC TTATGACTGG CATGTTATTC CAAATGTTGA TGGTCATGAC GCTGACGCTA TTGATGCTGC GATTCGTGAA GCGAAATCCG TTAACGATAA GCCGACATTG ATCTGTACAC GTACTACGAT TGGTTTTGGT TCGCCAAACC TATGTGGTTC TCATGATTGT CATGGTGCAC CATTAGGTGA CGAAGAAATT AAGCTGACAC GTGAAAACCT AGGTTGGGAT TATGAGCCTT TTGTTATTCC TGATGAGGTT TATCAAGGTT GGGATCACAA AGAAAAAGGT GCGACATCTG AAGCTGAGTG GAATGCTAAG TTTGAAGCGT ATCGCGCTGA GTATCCAAAA GAAGCGGCTG AATTTGAACG TCGTATGGCG GGTGACTTAC CTGCGAACTT CGAAGTTGAA ATGGATAACT TCATTGCGAA AACGCAAGAA GAAATGCCAA ACATCGCTTC TCGTAAAGCG TCTCAAAATG CAATTGAAGC AATGGGTCCT TTGCTACCGG AAATGTTCGG TGGGTCAGCT GACTTAACAG GGTCAAACTT AACAAACTGG TCTGGTACGG TCAAAGTTAA CTCAACTGTA GCGGATGGTA ACTACCTGTC TTGGGGTGTT CGTGAGTTTG GTATGGCGCA TATGATGAAC GGTATGGTTC TTCATGGCGG GTTCAAAGTT TACGGCGGAA CCTTCTTCAT GTTTATGGAA TTCATGCGTA ATGCATTGCG TATGTCTGCC TTGATGAAAA TCGGTACGAT TTATGTGTAT ACACATGACT CTATCGGTCT AGGTGAAGAT GGTCCAACGC ATCAACCAGT TGAGCAATTG GCTACCATGC GTGTGATCCC GAACTTCCAA ACGTGGCGCG GATGTGATGC GGTTGAATCA GCCGTTTCAT GGAAAGTGGC TATGATGCGT GGTGACGCAC CAACAGCGTT GGTTTTCTCT CGTCAAAACC TAACGCCTAT GGAGCGTACG CCAGAGCAAG TTAAGAACAT TGAAAAAGGT GGATACGTTC TGAAAGATTG TGACGGTACG CCTGATATTA TCTTTATTGC AACCGGTTCT GAAGTTGGTT TGGCTGTTGA AGCAGCTGAT GCAATGAATG AAAAAGTCCG TGTTGTTTCA ATGCCTTCAA CGTGTGCATT TGATACGCAA GATCAAGCGT ACAGAGACTC TGTCTTAATT CCTGGTGTGA AGCGCGTTGC GATTGAAGCC GGTGTAGCAC AGTCTTGGTA CAAATACGTG GGTCTTGATG GTGGTATGGT TTGCATGTCA ACATTCGGTG AATCTGCGCC AGCAGGCGAA CTGTTCAAAG AGTTCGGTTT CACTGTAGAA AATGTTGTTG CAACAGCAAA CAAGGTTCTT GGTAAATAA
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Protein sequence | MSTRRELANA IRVLSMDAVQ KAKSGHPGAP MGMADIAEVL WNDHMKYNPT NANWADRDRF VLSNGHGSML IYSLLHLTGF DLSIDDIKNF RQLHAKTAGH PEYGYADGIE TTTGPLGQGL TNAVGMAIAE RTLGAQFNKP GHNIVDHNTY VFMGDGCLME GLSHEAAAMA GTLGLGKLIA FWDDNDISID GHIGDWMEKG VPGRFKSYDW HVIPNVDGHD ADAIDAAIRE AKSVNDKPTL ICTRTTIGFG SPNLCGSHDC HGAPLGDEEI KLTRENLGWD YEPFVIPDEV YQGWDHKEKG ATSEAEWNAK FEAYRAEYPK EAAEFERRMA GDLPANFEVE MDNFIAKTQE EMPNIASRKA SQNAIEAMGP LLPEMFGGSA DLTGSNLTNW SGTVKVNSTV ADGNYLSWGV REFGMAHMMN GMVLHGGFKV YGGTFFMFME FMRNALRMSA LMKIGTIYVY THDSIGLGED GPTHQPVEQL ATMRVIPNFQ TWRGCDAVES AVSWKVAMMR GDAPTALVFS RQNLTPMERT PEQVKNIEKG GYVLKDCDGT PDIIFIATGS EVGLAVEAAD AMNEKVRVVS MPSTCAFDTQ DQAYRDSVLI PGVKRVAIEA GVAQSWYKYV GLDGGMVCMS TFGESAPAGE LFKEFGFTVE NVVATANKVL GK
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