Gene Tcr_0244 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTcr_0244 
Symbol 
ID3761509 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThiomicrospira crunogena XCL-2 
KingdomBacteria 
Replicon accessionNC_007520 
Strand
Start bp291921 
End bp293909 
Gene Length1989 bp 
Protein Length662 aa 
Translation table11 
GC content45% 
IMG OID637784949 
Producttransketolase 
Protein accessionYP_390514 
Protein GI78484589 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0021] Transketolase 
TIGRFAM ID[TIGR00232] transketolase, bacterial and yeast 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0000000179813 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCAACTC GTAGAGAACT TGCTAATGCG ATTCGTGTCT TGAGCATGGA CGCAGTACAA 
AAAGCTAAAT CTGGTCATCC AGGTGCACCG ATGGGTATGG CTGATATTGC CGAAGTCCTG
TGGAATGACC ACATGAAATA TAACCCAACA AATGCAAATT GGGCTGATCG TGACCGTTTC
GTTTTATCAA ACGGCCATGG TTCGATGCTG ATTTATTCTT TGTTGCACTT AACAGGCTTT
GATCTAAGTA TTGACGATAT TAAAAACTTC CGTCAATTGC ACGCTAAAAC AGCGGGTCAC
CCAGAGTACG GTTATGCCGA TGGTATTGAA ACAACAACAG GTCCTTTAGG TCAGGGGCTT
ACGAATGCTG TTGGTATGGC GATCGCAGAG CGCACGTTAG GCGCTCAGTT CAACAAGCCT
GGTCACAACA TCGTTGATCA CAATACATAT GTTTTCATGG GTGACGGTTG TTTGATGGAA
GGTCTGTCTC ATGAAGCGGC AGCGATGGCA GGAACTCTAG GTCTTGGGAA GTTAATTGCT
TTCTGGGATG ATAACGATAT TTCTATCGAT GGTCATATCG GTGACTGGAT GGAAAAAGGT
GTTCCTGGTC GCTTCAAGTC TTATGACTGG CATGTTATTC CAAATGTTGA TGGTCATGAC
GCTGACGCTA TTGATGCTGC GATTCGTGAA GCGAAATCCG TTAACGATAA GCCGACATTG
ATCTGTACAC GTACTACGAT TGGTTTTGGT TCGCCAAACC TATGTGGTTC TCATGATTGT
CATGGTGCAC CATTAGGTGA CGAAGAAATT AAGCTGACAC GTGAAAACCT AGGTTGGGAT
TATGAGCCTT TTGTTATTCC TGATGAGGTT TATCAAGGTT GGGATCACAA AGAAAAAGGT
GCGACATCTG AAGCTGAGTG GAATGCTAAG TTTGAAGCGT ATCGCGCTGA GTATCCAAAA
GAAGCGGCTG AATTTGAACG TCGTATGGCG GGTGACTTAC CTGCGAACTT CGAAGTTGAA
ATGGATAACT TCATTGCGAA AACGCAAGAA GAAATGCCAA ACATCGCTTC TCGTAAAGCG
TCTCAAAATG CAATTGAAGC AATGGGTCCT TTGCTACCGG AAATGTTCGG TGGGTCAGCT
GACTTAACAG GGTCAAACTT AACAAACTGG TCTGGTACGG TCAAAGTTAA CTCAACTGTA
GCGGATGGTA ACTACCTGTC TTGGGGTGTT CGTGAGTTTG GTATGGCGCA TATGATGAAC
GGTATGGTTC TTCATGGCGG GTTCAAAGTT TACGGCGGAA CCTTCTTCAT GTTTATGGAA
TTCATGCGTA ATGCATTGCG TATGTCTGCC TTGATGAAAA TCGGTACGAT TTATGTGTAT
ACACATGACT CTATCGGTCT AGGTGAAGAT GGTCCAACGC ATCAACCAGT TGAGCAATTG
GCTACCATGC GTGTGATCCC GAACTTCCAA ACGTGGCGCG GATGTGATGC GGTTGAATCA
GCCGTTTCAT GGAAAGTGGC TATGATGCGT GGTGACGCAC CAACAGCGTT GGTTTTCTCT
CGTCAAAACC TAACGCCTAT GGAGCGTACG CCAGAGCAAG TTAAGAACAT TGAAAAAGGT
GGATACGTTC TGAAAGATTG TGACGGTACG CCTGATATTA TCTTTATTGC AACCGGTTCT
GAAGTTGGTT TGGCTGTTGA AGCAGCTGAT GCAATGAATG AAAAAGTCCG TGTTGTTTCA
ATGCCTTCAA CGTGTGCATT TGATACGCAA GATCAAGCGT ACAGAGACTC TGTCTTAATT
CCTGGTGTGA AGCGCGTTGC GATTGAAGCC GGTGTAGCAC AGTCTTGGTA CAAATACGTG
GGTCTTGATG GTGGTATGGT TTGCATGTCA ACATTCGGTG AATCTGCGCC AGCAGGCGAA
CTGTTCAAAG AGTTCGGTTT CACTGTAGAA AATGTTGTTG CAACAGCAAA CAAGGTTCTT
GGTAAATAA
 
Protein sequence
MSTRRELANA IRVLSMDAVQ KAKSGHPGAP MGMADIAEVL WNDHMKYNPT NANWADRDRF 
VLSNGHGSML IYSLLHLTGF DLSIDDIKNF RQLHAKTAGH PEYGYADGIE TTTGPLGQGL
TNAVGMAIAE RTLGAQFNKP GHNIVDHNTY VFMGDGCLME GLSHEAAAMA GTLGLGKLIA
FWDDNDISID GHIGDWMEKG VPGRFKSYDW HVIPNVDGHD ADAIDAAIRE AKSVNDKPTL
ICTRTTIGFG SPNLCGSHDC HGAPLGDEEI KLTRENLGWD YEPFVIPDEV YQGWDHKEKG
ATSEAEWNAK FEAYRAEYPK EAAEFERRMA GDLPANFEVE MDNFIAKTQE EMPNIASRKA
SQNAIEAMGP LLPEMFGGSA DLTGSNLTNW SGTVKVNSTV ADGNYLSWGV REFGMAHMMN
GMVLHGGFKV YGGTFFMFME FMRNALRMSA LMKIGTIYVY THDSIGLGED GPTHQPVEQL
ATMRVIPNFQ TWRGCDAVES AVSWKVAMMR GDAPTALVFS RQNLTPMERT PEQVKNIEKG
GYVLKDCDGT PDIIFIATGS EVGLAVEAAD AMNEKVRVVS MPSTCAFDTQ DQAYRDSVLI
PGVKRVAIEA GVAQSWYKYV GLDGGMVCMS TFGESAPAGE LFKEFGFTVE NVVATANKVL
GK