| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tcr_0172 |
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| Symbol | metH |
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| ID | 3762483 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thiomicrospira crunogena XCL-2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007520 |
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| Strand | - |
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| Start bp | 203000 |
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| End bp | 206719 |
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| Gene Length | 3720 bp |
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| Protein Length | 1239 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 637784877 |
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| Product | B12-dependent methionine synthase |
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| Protein accession | YP_390442 |
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| Protein GI | 78484517 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0646] Methionine synthase I (cobalamin-dependent), methyltransferase domain
[COG1410] Methionine synthase I, cobalamin-binding domain |
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| TIGRFAM ID | [TIGR00640] methylmalonyl-CoA mutase C-terminal domain
[TIGR02082] 5-methyltetrahydrofolate--homocysteine methyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.432955 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCCGAAT TTGAAAATCG TCCAACAAGA ATTGCTCAAT TAAGAAGCTT ACTGAATCAG
CGCATCGTGG TGCTGGATGG CGCAATGGGA ACAATGGTAC AAGACCTAGC CCTCAGTGAA
GAGGATTTCC GAGGAGATCG ATTCACCGAC TACCACATGG ATATCAAAGG CAATAATGAT
ATCTTGGTCA TGACACAACC GGCAATGATT CGAGACATTC ACTTGGCTTT TTTACGCCAA
GGGGCGGACA TCATTGAAAC CAATTCATTC AATGCCACCA CCATCGCTCA AGCGGACTAT
GACATGCAAG ACACTGTCAC CGAGCTTAAC ATCGCGGCAG CAACCGTGGC ACGCGAAGCG
TGTCAAATCG CCGAAAAAGA AGATGGTAAG CCTCGCTTTG TGGCCGGCGT GCTTGGGCCA
ACCAACCGAA CTGCGTCGAT TTCGCCAGAT GTGAATGACC CCGGCAAACG AAATACCCAC
TTCGATGAGC TGGTCACCGC TTACAAGCAA GCCACTCACG CCTTATTAAA AGGTGGCGCA
GACGTCATTC TGATTGAAAC CATTTTCGAC ACGCTGAATG CCAAAGCCGC TATTTTTGCA
GTGAAAGACG TGGAAGAAGA AATTGGCTAT GAAGTACCGA TTATGCTGTC GGGCACCATC
ACTGATGCGT CTGGACGCAC CTTATCCGGG CAAACCACCG AAGCCTTTTA TAACGCGGTT
GCCCATGCAC AACCCTTATC CATCGGCTTA AACTGTGCCT TGGGGCCGGA AGAACTGCGC
CAATATGTTG AAGAACTCAG CCGCGTGTGT GAGACCTATG TCTCCGTGCA CCCTAATGCT
GGGTTGCCGA ATGAGTTTGG AGAGTATGAT GAAACCCCGG AGCAAATGGC ACATGAAATC
GCCATTTGGG CCGAAAAAGG TTGGTTAAAC ATTATTGGCG GCTGTTGTGG CACCACCCCA
GACCATGTCG AAGCCATGGC AAATGCCGCA TTGGCGCACC CGGCTCGCAC TTTGCCTGAA
ATCGCCCCTG CGTGCCGTTT ATCCGGTTTA GAACCGCTGA ACATTGATGA CAACAGTTTG
TTTGTCAATA TTGGTGAGCG TAACAATGTC ACCGGTTCGG CGAAGTTCAA ACGTCTTATT
ATTGAAGAAA ACTACAACGA AGCCATTGAT ATTGCCGTGA AGCAAGTGGA AGACGGCGCT
CAAATCATCG ATGTCAATAT GGATGAAGGA ATGCTGGACG CAAAGGCCTG TATGGTGAAG
TTTTTGAACC TATTGGCTTC CGAACCCGAA GCCTCTCGTG TTCCGATTAT GATCGACTCA
TCTAAATGGG AAGTGATTGA AGCCGGTTTA AAATGCATCC AGGGTAAAGG CGTGGTGAAT
TCCATCTCCT TGAAAGAAGG GGAAGATGCC TTTATCCAGC AGGCCAGACT GGTCAAAAAA
TATGGTGCCG CGGCCATTGT GATGGCTTTT GATGAAGACG GACAAGCCGA CACTCTGGAA
CGAAAAATTG AAATTTGTGA ACGTTCTTAC AATGTTCTGA CGCAAAAAGT GGGCTTTTTA
CCCCAAGACA TCATTTTTGA CCCTAACATC TTCGCCGTGG CCACCGGGAT TGAAGAGCAT
AATAACTATG GTCTAGACTT TATCAATGCG GTCACTTGGA TCAAACAAAA CCTGCCTTAT
GCCAAAATTT CCGGCGGGGT ATCCAACGTC TCTTTCTCTT TCCGAGGAAA CAACCCGGTC
CGTGAAGCCA TTCACTCCGT CTTTTTATAC TATGCCATCA AAGAAGGCAT GGATATGGGG
ATCGTGAATG CCGGCCAAAT GGCTATTTAT GACGACCTTC CAGAAAAACT GCGTGTGGCG
GTTGAAGATG TCATCCTCAA TAAAGATCCA GAAGCAGGCG AACGCTTATT GGAAGTGGCC
GAAGAATATC GCGGCGACGG ACAAGCCACG TCGAAAGTAA CCGATACCGC CTGGCGTGAA
ACAACCGTTG AAAAACGATT GGAACATTCT TTGGTAAAAG GCATCACCGA TTACATTGAG
GCGGATACCG AAGAAGCCTA TCAAAAGCTA GGCGCACCGA TTAATGTCAT TGAAGGGCCG
TTAATGGATG GCATGAATGT CGTCGGAGAT TTGTTCGGTT CTGGGAAAAT GTTTCTTCCT
CAAGTGGTGA AATCGGCTCG CGTCATGAAA CGCGCGGTGG CGTATCTTGA TCCTTATCTG
GAAGCGGAAA AATCCGAAGG ACAGGTGCAA GGTAAAATTG TCATGGCGAC CGTTAAGGGA
GATGTACACG ATATCGGTAA AAACATTGTC GGCGTCGTTC TGCAATGTAA TAACTTCGAA
GTCATCGACT TGGGGGTCAT GGTGCCTGCT GAAAAAATCC TCGATACCGC CATTGAACAA
AATGCCAATG TCATCGGGCT ATCAGGCCTC ATCACCCCGT CTCTTGAAGA GATGGTCAAT
GTCGCGAAAC TGATGAAAGA ACGCGGCATG AATCTTCCTT TATTAATTGG GGGGGCCACC
ACGTCCAAGG CGCATACAGC CGTTAAGATC GAACCGCAAT ACGATCATCC AGTGGTCTAT
GTAAAAGACG CATCACGTGC GGTTGGGGTA GCACAAAGCT TAATATCAAA CGATTTGAAA
GAGACGTTTG CCGCTAAAAT CAAAGCTGAG TACGAACAAG TTCGAGAAGA ACGTAAGGCT
CGCGCCAAAC AGGTCAAGCG TATCCCGATT AAACAAGCTC GATTGAATCC GGCGTTGGAT
GACCAGGCCT GGGAGAATTA CACACCGGTT AAGCCAAGCT TCCTCGGCAC CAAAGTGCTT
GAAAGCTTTC CATTGGAAAA ACTGCTTGAA CGCTTTGACT GGTCACCGTT CTTCCAATCC
TGGGAACTGC ATGGCCTTTA TCCGAGAATC TTAGACGATA AAGTGGTGGG GGACGAAGCA
CGCAAAGTCT TTGCGGATGC CCAAGCATTG CTGAAAACCA TTATCGATCA AAAATGGCTG
ACCGCAAAAG CCGTGTATGG ATTCTACCCG GCCAATCGCG TTGGGGATGA CATAGAAGTC
TACACGGATG AAAGCCGAAC AGAAGTCCTT CATACCTTCC ATCATTTGCG CCAACAAGCC
GAGAAAAAGC GTGGCGGTGC CAACAACTGT CTTTCCGACT TTATCGCTCC GAAAGAAAGT
GGCGTCGCTG ACTACATTGG ATTCTTTGCG GTCACGGCGG GCATTGGTAT TGAAGAGCAT
ATCGCACGCT TTGAGAAAGA ACATGATGAC TATCATTCCA TTATGTTAAA AGCACTCGCG
GATCGATTTG CTGAAGCTTT TGCCGAAACA TTGCATGAAA TCGTTCGTAA AGAAGATTGG
GGTTATGCAC CCAATGAACA GCTTGAGAAC GAAGACATCA TTCGTGAACG CTATCAAGGT
ATTCGTCCAG CCCCCGGTTA CCCTGCCTGC CCGGATCATA CCGAAAAAGG TATTCTCTGG
GATTTAATAA AACCGGATGA GAAAATAGGT TTGGAAATTA CCGAAAGTTT TGCCATGACC
CCTACGGCCG CTGTTTCAGG AACCTATTTC GCCCATCCAA AATCCCGTTA TTTTGGAGTC
GGTTCAATTG GTCGAGATCA AGTTGAGGAC TACGCGATTC GAAAAGGATG GTCAATTGAA
GAAACCGAAA AATGGTTGGC ACCGAATTTA GGGTACGACC CTGAAGATTT TGCTAACTGA
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| Protein sequence | MSEFENRPTR IAQLRSLLNQ RIVVLDGAMG TMVQDLALSE EDFRGDRFTD YHMDIKGNND
ILVMTQPAMI RDIHLAFLRQ GADIIETNSF NATTIAQADY DMQDTVTELN IAAATVAREA
CQIAEKEDGK PRFVAGVLGP TNRTASISPD VNDPGKRNTH FDELVTAYKQ ATHALLKGGA
DVILIETIFD TLNAKAAIFA VKDVEEEIGY EVPIMLSGTI TDASGRTLSG QTTEAFYNAV
AHAQPLSIGL NCALGPEELR QYVEELSRVC ETYVSVHPNA GLPNEFGEYD ETPEQMAHEI
AIWAEKGWLN IIGGCCGTTP DHVEAMANAA LAHPARTLPE IAPACRLSGL EPLNIDDNSL
FVNIGERNNV TGSAKFKRLI IEENYNEAID IAVKQVEDGA QIIDVNMDEG MLDAKACMVK
FLNLLASEPE ASRVPIMIDS SKWEVIEAGL KCIQGKGVVN SISLKEGEDA FIQQARLVKK
YGAAAIVMAF DEDGQADTLE RKIEICERSY NVLTQKVGFL PQDIIFDPNI FAVATGIEEH
NNYGLDFINA VTWIKQNLPY AKISGGVSNV SFSFRGNNPV REAIHSVFLY YAIKEGMDMG
IVNAGQMAIY DDLPEKLRVA VEDVILNKDP EAGERLLEVA EEYRGDGQAT SKVTDTAWRE
TTVEKRLEHS LVKGITDYIE ADTEEAYQKL GAPINVIEGP LMDGMNVVGD LFGSGKMFLP
QVVKSARVMK RAVAYLDPYL EAEKSEGQVQ GKIVMATVKG DVHDIGKNIV GVVLQCNNFE
VIDLGVMVPA EKILDTAIEQ NANVIGLSGL ITPSLEEMVN VAKLMKERGM NLPLLIGGAT
TSKAHTAVKI EPQYDHPVVY VKDASRAVGV AQSLISNDLK ETFAAKIKAE YEQVREERKA
RAKQVKRIPI KQARLNPALD DQAWENYTPV KPSFLGTKVL ESFPLEKLLE RFDWSPFFQS
WELHGLYPRI LDDKVVGDEA RKVFADAQAL LKTIIDQKWL TAKAVYGFYP ANRVGDDIEV
YTDESRTEVL HTFHHLRQQA EKKRGGANNC LSDFIAPKES GVADYIGFFA VTAGIGIEEH
IARFEKEHDD YHSIMLKALA DRFAEAFAET LHEIVRKEDW GYAPNEQLEN EDIIRERYQG
IRPAPGYPAC PDHTEKGILW DLIKPDEKIG LEITESFAMT PTAAVSGTYF AHPKSRYFGV
GSIGRDQVED YAIRKGWSIE ETEKWLAPNL GYDPEDFAN
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