| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tcr_0044 |
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| Symbol | |
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| ID | 3762198 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thiomicrospira crunogena XCL-2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007520 |
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| Strand | + |
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| Start bp | 52701 |
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| End bp | 55520 |
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| Gene Length | 2820 bp |
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| Protein Length | 939 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 637784750 |
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| Product | DNA polymerase I |
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| Protein accession | YP_390315 |
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| Protein GI | 78484390 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0258] 5'-3' exonuclease (including N-terminal domain of PolI)
[COG0749] DNA polymerase I - 3'-5' exonuclease and polymerase domains |
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| TIGRFAM ID | [TIGR00593] DNA polymerase I
[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.00167336 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACTCAAA TCCTTCCTGA ATTCAATCCA GACAGTCCTT TTATCTTAGT TGACGGCTCG
TCTTACCTGT TCCGGGCGTT TCATGCCATG CCACCCTTGA CGAACACCAA AGGGCATGCC
ACCGGGGCGA TTTTCGGTGT CATCAATATG ATTGGAAAGT TATTAGAGCA ATACCAACCC
GAACGCATTG CGGTGGTATT TGATGCCAAA GGAAAAAATT TTCGCCATGA ACTCTATGAG
GACTACAAAG CCCATCGCCC GCCAATGCCA GATGAGTTGC GCATTCAGAT TGAACCGATT
CATGAAATCA TCAAAGCATT GGGCATTCCT TTGTTAGTGA TTGATGGTGT GGAAGCCGAT
GATGTGATGG GCACCCTGGC CCACCAAGCC ACCCAGGCGA AAATGGACGC GCTGCTGTCA
ACCGGGGATA AAGACATGGC GCAATTGGTG AATGAACACA TTACCCTTGT TAACACCATG
AATGATACGT TGATGACACC TGACAGTGTG TTTGAAAAGT TCCACGTGAA ACCTGAACAG
ATTATTGATT ATCTGGCCTT AATGGGCGAT AGCAGTGACA ACATTCCTGG CATTCCCAAA
TGTGGTCCCA AAACCGCCGC AAAATGGATT TCCGAATATG GCTCTATTGA TAATTTGATT
GAGCATGCGG AGGAAATTAA AGGCAAAATC GGTGAAAATT TACGTGCCAA TTTAGAACAA
CTGAAATTAT CACAACAGTT AACCACCATT CGACTGGATT GCGACCTACC AATTGCACTT
AATGACATCA AACGCCATGA AGCGGATATG GAGGCACTGG AAGCCCTGTT TTCTGAATAC
GACTTACGTA ACTGGTTAAC CCGCGTATTA AAAGGCGAAC TGCCTTTCAG TAAAAGCAGC
GGTCGAAAAG CTCATTCCGA AACCGTCACT AACGGCCAGT CAAAAAAAGC CAATACCTCT
CCGTCGACAG AGACACCAAA AGCGGATTCG CAACCTTATG AAACCATTGT CGACTGGCAC
ACTTTCGATC AATGGCTTAA AAAGCTCGAA GCATCGGATG TTTTTGCGAT TGATACCGAA
ACCACTTCCT TAAATGCTAT GGAAGCAAAA ATTGTTGGTG TCAGCTTTGC CTATGCTGAA
AAAAAGGACC AGGCCTGGCA GAATTTTGCG GCGTATGTGC CCTTAACCCA CGACTATGAC
GGTGCACCGG AACAATTACC GATTCAAGAG GTATTGGCAA AATTGAAACC GCTTCTGGAA
AACCCAGCCA TCAAGAAAGT TGGCCAAAAT TTTAAATATG ACTGGCACAT TTTCAAAAAT
GCGGGCATTG AAGTCCAAGG CATGGCGTAT GACACCATGC TGGAATCTTA CTGTTTTAAC
AGTGTTGCAA CACGCCACAA TATGGATGAT TTGGCGTTGA CGTATCTAAA CCACAGCACC
ATTCATTTTA AAGACATTGC CGGTACAGGA AAAAAACAAA AAACCTTTAA TCAGATTGAA
CTGGAAACAG CTTCACCTTA TGCCGCAGAA GATGCGGATA TCACGCTGCA ACTGCATCAA
ACATTGCTAC CGAAACTGCA AGCCGAACCG ACTTTATATA AGGTCTTTGA AGAAATTGAA
ATGCCATTAA TGCCTGTCTT GGCAAAAATG GAACGAAATG GCGTGTTGAT TGATCGTCAA
ATGTTGGCAG ACCAGTCTTA TGAACTGGGA CAAAAACTCA CTGAGCTGGA ACAAAAAGCC
CATTTAATCG CTGGCACACC GTTTAATTTG AATTCCTCCA AACAATTACA GGAAGTGCTG
TTTGAACGCC TGGAGCTTCC TATCGTGAAA AAAACCCCGA AAGGTCAACC TTCCACCGCG
GAACCGGTGC TGGTGCAGTT GGCGGAAGAC GGTCACGAAA TGCCAAATTT AATTCTCGAA
TATCGTAGTT TGGCAAAATT AAAATCAACC TACACCGATT CTTTACCAAA GCAAATCAAT
CAACAAACGG GACGCGTCCA TACTTCTTAT CAACAAGCGG TGGCCTCAAC TGGGCGTTTA
TCTTCAACAG AGCCCAATTT ACAGAACATT CCGATTCGAA GCGCCGAAGG ACGACGTATC
CGTCAGGCAT TTATTGCCCA ACCAGGTTAT CGCTTAATGG CCTCGGATTA CTCGCAAATT
GAATTGCGCA TCATGGCGCA TTTATCGGGC GATGCGAGTT TATTAAAGGC TTTTGCCGAG
GGCAAAGACA TTCACCAGGC GACCGCGGCC GAAATTTTTA ACATGCCGTT AGAAGAGGTC
ACATCCGAAC AACGCCGCAG TGCGAAAGCG GTCAACTTCG GATTGATTTA TGGCATGTCA
GCCTTTGGGT TAGCAAAACA ACTCAACATC AGCCGAGGGT TGGCACAAGA ATACATCAAC
CTTTATTTTG CGCGTTATCC CGGCGTGGCA AATTATATGG AATCCACAAA AGAAAACGCC
AAACAAACTG GCTATGTTGA AACCTTAATG GGTCGTCGAC TGTATTTACC AGATATTAAT
GCCAAAAATG GTCAATTAAG ACAATATGCG GAAAGAACCG CCATCAACGC ACCGATGCAA
GGCACGGCCG CCGACATCAT CAAAACTGCC ATGGTGAAAA TGCAGCAATG GCTCGATCAA
ACCCCGTGTG ATATCAAAAT GTTAATGCAA GTGCACGATG AATTGGTTTT TGAAGTGGCT
GAAGCCGATA TGGATCAAGC CAGAAAGGAA ATCAAGACCA TTATGGAAGC CGCTTTAAAG
CTCGATGTGC CATTGATTGT TGAAATTGGC GACGGCCTAA ATTGGGATGA AGCACACTGA
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| Protein sequence | MTQILPEFNP DSPFILVDGS SYLFRAFHAM PPLTNTKGHA TGAIFGVINM IGKLLEQYQP
ERIAVVFDAK GKNFRHELYE DYKAHRPPMP DELRIQIEPI HEIIKALGIP LLVIDGVEAD
DVMGTLAHQA TQAKMDALLS TGDKDMAQLV NEHITLVNTM NDTLMTPDSV FEKFHVKPEQ
IIDYLALMGD SSDNIPGIPK CGPKTAAKWI SEYGSIDNLI EHAEEIKGKI GENLRANLEQ
LKLSQQLTTI RLDCDLPIAL NDIKRHEADM EALEALFSEY DLRNWLTRVL KGELPFSKSS
GRKAHSETVT NGQSKKANTS PSTETPKADS QPYETIVDWH TFDQWLKKLE ASDVFAIDTE
TTSLNAMEAK IVGVSFAYAE KKDQAWQNFA AYVPLTHDYD GAPEQLPIQE VLAKLKPLLE
NPAIKKVGQN FKYDWHIFKN AGIEVQGMAY DTMLESYCFN SVATRHNMDD LALTYLNHST
IHFKDIAGTG KKQKTFNQIE LETASPYAAE DADITLQLHQ TLLPKLQAEP TLYKVFEEIE
MPLMPVLAKM ERNGVLIDRQ MLADQSYELG QKLTELEQKA HLIAGTPFNL NSSKQLQEVL
FERLELPIVK KTPKGQPSTA EPVLVQLAED GHEMPNLILE YRSLAKLKST YTDSLPKQIN
QQTGRVHTSY QQAVASTGRL SSTEPNLQNI PIRSAEGRRI RQAFIAQPGY RLMASDYSQI
ELRIMAHLSG DASLLKAFAE GKDIHQATAA EIFNMPLEEV TSEQRRSAKA VNFGLIYGMS
AFGLAKQLNI SRGLAQEYIN LYFARYPGVA NYMESTKENA KQTGYVETLM GRRLYLPDIN
AKNGQLRQYA ERTAINAPMQ GTAADIIKTA MVKMQQWLDQ TPCDIKMLMQ VHDELVFEVA
EADMDQARKE IKTIMEAALK LDVPLIVEIG DGLNWDEAH
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