| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dde_3632 |
|---|
| Symbol | |
|---|
| ID | 3758619 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfovibrio desulfuricans subsp. desulfuricans str. G20 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007519 |
|---|
| Strand | + |
|---|
| Start bp | 3595706 |
|---|
| End bp | 3597031 |
|---|
| Gene Length | 1326 bp |
|---|
| Protein Length | 441 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 637784554 |
|---|
| Product | tolB protein, putative |
|---|
| Protein accession | YP_390120 |
|---|
| Protein GI | 78358671 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0823] Periplasmic component of the Tol biopolymer transport system |
|---|
| TIGRFAM ID | [TIGR02800] tol-pal system beta propeller repeat protein TolB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.000000231281 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAAC AGAATGTTAC CTTTTTCTGC GCGGTACTGC TGGCGTTGGT GCTGCATATC
GCCAGAGCAC AGGCGGCCCC TGTGGAGATA GACATCTTCG GCCCCGGTCA GAATCTGACC
TATGTGGCCA TGTCCGAACC TGTCACCGAT GCCGGCGCCC CGCTGCCCGC CATGGCGCCC
GAACTGCACA GGCTCATACG CCACAACCTC GGTTTTCTGC CGTTTCTTGA CTTTGTGGAC
GGCAAAACCG TTATCGGCGG CAACACCCCG CAGGCGTACA AGGCCCCGGG CATCGATTTC
AGGCGTTATC TGCTGGCCGG CACAGACCTG CTGATTGTCA CCGGCTGGCC GCAGACACAG
CAGGGGCAGA GCAGCAGAGT GGAGCTGCGA GTCTATGAAA CAGGTCAGGG CAGCATGCTG
CTGGGCAAGG CGTACTACGT CACGTCCGAA TCACTGCTGC CCGTGGTGGC CGACAAATTC
TGCAGCGACT TCATGAAAAT GCTCACGGGA CGGGGCGACT TTTTCCTGTC CACGCTGGCT
TTTGTCAGCC AGAGCAGAAA CGGCCAGAAA GATATCTGGG CAGTACGCCC CACAGGGCGC
GACCTGCGGC AGCTCACCGC GGTGCAGGGC ATTGCCCTGT CACCTTCATG GTCGCCCGAC
GGGCGTTATG TCATTTTCAG CCACATCGGC GAACGCAGTC ATGCACTGGG TGTGTGGGAC
CGCATCAACA ACCGCACCCA GCTTATCCGG TTTCCGGGCA ACACGGTCAT CGGGCCGACT
TTTCTGCCGG ACAACAGAGT GGCTGTCAGC CTTGCCGTCA ACGGCAACCC CGACATTTTT
CTGCTGAACC ACATCTTTAA AAAGCAGAAA GTGCTTGAGC AGAGCTGGGG CATTGACGTA
TCGCCATCAC TGGATGCCAC CGGCAAAAAA ATGGCATTTG TCTCCAGCCG GCTGGGTAAT
CCCAACATTT TTCTGAAAGA TCTGGACTCC GGCAGTGTCA GACGCATATC CCGCGAAGGC
AAATACAACA CATCGCCGGA TATCAGCCCC GACGGAACGC TGATAGTGTA TTCGCGCCGC
ACCGGCGACG GGCACCGCAT ATTTGTGCAC GATCTGGTGA CCGGACGCGA AAAACAGATA
ACCTTCGGGC CGGGCAATGA TGAAATGCCC AGCTTTGCAC CGGACAGCTA CTTTATAGCC
TTTGCCTCGA ACCGCAGCGG CAAATATAAA GTGTATCTGA CAACACGCCA CGGAGGCACC
CCCAAAATGG TCGATACAGG CTCTCACGAT GCCTCGTTTC CTGCATGGGG CAAACTTTCT
GACTGA
|
|---|
| Protein sequence | MKKQNVTFFC AVLLALVLHI ARAQAAPVEI DIFGPGQNLT YVAMSEPVTD AGAPLPAMAP
ELHRLIRHNL GFLPFLDFVD GKTVIGGNTP QAYKAPGIDF RRYLLAGTDL LIVTGWPQTQ
QGQSSRVELR VYETGQGSML LGKAYYVTSE SLLPVVADKF CSDFMKMLTG RGDFFLSTLA
FVSQSRNGQK DIWAVRPTGR DLRQLTAVQG IALSPSWSPD GRYVIFSHIG ERSHALGVWD
RINNRTQLIR FPGNTVIGPT FLPDNRVAVS LAVNGNPDIF LLNHIFKKQK VLEQSWGIDV
SPSLDATGKK MAFVSSRLGN PNIFLKDLDS GSVRRISREG KYNTSPDISP DGTLIVYSRR
TGDGHRIFVH DLVTGREKQI TFGPGNDEMP SFAPDSYFIA FASNRSGKYK VYLTTRHGGT
PKMVDTGSHD ASFPAWGKLS D
|
|---|
| |