Gene Dde_2388 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDde_2388 
Symbol 
ID3757404 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfovibrio desulfuricans subsp. desulfuricans str. G20 
KingdomBacteria 
Replicon accessionNC_007519 
Strand- 
Start bp2412457 
End bp2413062 
Gene Length606 bp 
Protein Length201 aa 
Translation table11 
GC content51% 
IMG OID637783284 
Product3'-5' exonuclease 
Protein accessionYP_388880 
Protein GI78357431 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0349] Ribonuclease D 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones9 
Plasmid unclonability p-value0.000109184 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAGAATA TTCCAGAAAA GTATACAAAA AAATTCAGTA AGGATGAGAT CAATTCACTG 
CCTCTCCGGC GGTATACCGG TCCTGTTACG CTTGTGCGTA CAGAAGACGA GCTGGAAGCG 
GCGCTGCGGG CGCTGCATTC TGAAGAATTG ATCGGATTTG ACACAGAGAC CCGTCCCACG 
TTCCGCAAGG GCAAGATGAA TCTGCCTTCG CTTATCCAGT TTGCGGCGCG GGATATGGTC 
TATCTTATCC ATCTTGGTTG GGTGGCCTTC AGTGAAGGCA TACAGGACGT ATTGTCGTCT 
CCGCATATCG TGAAGACCGG TGTTGCGGTG CGTGACGACA TCAAGGATTT GAAAAAACTG 
GCCTGTTTTG AAGACGCCGC AGTGGTCGAT CTGGGCGAGG TGGCGCGTGA ACTGGGCATG 
GAAACTCACG GATTGCGTAA CCTTGCGGCA AATCTGCTTG AATTTCGCAT TTCCAAAGCT 
GCCCAGTGTT CAAACTGGAG TAATCTGGAA CTGTCCAGGC AACAGATAAG TTATGCCGCC 
ACAGATGCCT GGGTAAGCCG CGAAATCCAC CTGCGGATGC GCGAACTGGG ACTTGTTTCA 
TTTTAA
 
Protein sequence
MKNIPEKYTK KFSKDEINSL PLRRYTGPVT LVRTEDELEA ALRALHSEEL IGFDTETRPT 
FRKGKMNLPS LIQFAARDMV YLIHLGWVAF SEGIQDVLSS PHIVKTGVAV RDDIKDLKKL 
ACFEDAAVVD LGEVARELGM ETHGLRNLAA NLLEFRISKA AQCSNWSNLE LSRQQISYAA 
TDAWVSREIH LRMRELGLVS F