Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dde_2353 |
Symbol | |
ID | 3757369 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Desulfovibrio desulfuricans subsp. desulfuricans str. G20 |
Kingdom | Bacteria |
Replicon accession | NC_007519 |
Strand | - |
Start bp | 2373604 |
End bp | 2376936 |
Gene Length | 3333 bp |
Protein Length | 1110 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 637783249 |
Product | alpha amylase domain-containing protein |
Protein accession | YP_388845 |
Protein GI | 78357396 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG0366] Glycosidases [COG3281] Uncharacterized protein, probably involved in trehalose biosynthesis |
TIGRFAM ID | [TIGR02456] trehalose synthase [TIGR02457] trehalose synthase-fused probable maltokinase |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.544253 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGCATTA TGATTGAGCC GGCGGGCCTT GATCCGCAGT GGTACAGGGA TGCCATCATA TACGAATTGC ACATCAAATC GTTTCATGAT TCCGACGGCG ACGGCATGGG CGATATGGCG GGGCTGATTG AAAAACTGGA CTATCTGCAG GATCTCGGGG TCACGGCGCT GTGGCTGCTG CCCTTTTACC CCTCTCCGCT GCGTGATGAC GGCTACGATA TTGCCGACTA CATGAGCATC AACCCCGACT ACGGCAGCAT GGCTGACTTC CGCAAGCTGC TGCGCGAGGC TCATTCCCGC GGGTTGCGCG TCATTACAGA ACTGGTGCTC AACCACACCT CAGACCAGCA TGCCTGGTTC CGGCGGGCGC GGCGGGCCCC TGCCGGTTCG GAAGAGCGCG ATTTTTACGT GTGGAGCGAT ACCTCGGACA GGTACAAGGA CGCCCGCATC ATTTTCAAAG ACTTCGAGCC TTCAAACTGG TCATGGGACC CTGTGGCACG GGCATATTAC TGGCATCGTT TCTATCATCA CCAGCCTGAT CTCAATTATG AAAATCCGGC CGTGCACAAG GCCATGTTCC GGGTCATCGA CTTCTGGCTG GACATGGGGG TGGACGGAGT GCGGCTGGAT GCTGTGCCCT ATCTGTACGA AGAAGAAGGC ACAAACTGCG AAAATCTGCC GCGGACCCAT GATTTTCTTA AAGCGTTGCG CAGCCACATA GACAGCAGAT TTCAGGGCCG CATGCTGCTG GCCGAGGCGA ACCAGTGGCC GGAAGACGCG GCCCGTTATT TCGGCGACGG TGATTCGTGT CATATGGCAT TTCATTTTCC GCTTATGCCG CGCATGTTTA TGGCCATTGA AATGGAAGAC CGTCATCCGG TCATTGATAT AATGGAGCAG ACTCCGGAAC TGCCGGACGG TTGCCAGTGG GCTATTTTTC TGCGTAACCA TGACGAACTG ACGCTGGAGA TGGTGACGGA CGAAGAGCGC GACTACATGT ACCGCATGTA TGCCCGTGAT CCGCGTGCGC GGATAAATCT CGGCATCCGC CGCCGCCTTG CCCCGCTGCT GGGCAACGAC CGCCGCAGAG TGGAGCTGCT TAACGTGCTG CTTTTCACCA TGCCGGGGAC ACCGGTGCTT TATTATGGTG ACGAGATAGG CATGGGGGAC AACTACTATC TGGGCGACCG CGACGGTGTG CGTACCCCCA TGCAATGGAG TGCGGACAGA AACGCCGGTT TTTCACGCTC CAATCCGCAG CGTCTTTTTC TGCCGGTGGT CATCGATCCG GAATACCACT ACGAGGCTGT GAATGTGGAA ACGCAGCAGT CCAACAAAAG TTCGCTGCTG TGGTGGATGA AGCGCATCAT CGCCATGCGC AGAAGATATA CGGCTTTCAG CCGGGGCGGC ATTTCGTTTC TCCGGCCGGA AAACTCCCGT GTGCTTGCCT ACATGCGCAG CTCTGGTGAA GAACATGTGC TGGTGGTGAC TAACCTGTCG CGGCACGCAC AGGCAGCTTC GCTGGATTTA AGCGGCTGGG AAGGCTACCG GCCGGTGGAA GTCTTCAGCA ACACGCGCTT TCCCGCTGTC AGGCAACCGG CGTATACAAT TACGCTCAAT CCTTACGGCT ACTATATTTT CCACATGCGC AGAGAGGAGG CGGCGGAAGC GCTTACCGGA TTATTTTCGC CGCCTATGCT CATGCCGGTG TCCGGAGCGC GTTTTCTTGA TGTGGAAGTA CGCGAGGCGC TGCAGCGCAG AGTTCTGCCC GGCTATCTGA CACGTCGCGG ATTGCTGGGA ACAAGCGCCG TGCAGCTGCG CGAGGCTGTC ATTCTGGAAG CGGTGCCCGT GGGCGGCAAG GGTGCCCCCA GCTGGTTGCT GATTGTGGAA GCACGGTATC AGGAGCGCCA GCCGGAATGG TTCGGCATGC TTGTATCGTT GCTGGCTGGT GAACCTGCCC GGCAGACGGT GCGTGAAGCG CCTGTGCATC TCATGTGCAC TTTTGGTGAA GACGCGCCGG AAGCCGTACT TGTGGAATCC TTTGATGCCA GCTGCCGTTG CGGCGCGTTG CTGCAGCTTG TCTCGCGCAC GCAGACAGTG AAGGGCAGGC ACGGCGAGCT GGCAGTGGCC CCCGCCGGCG GTACCCGCGG CAGAGTGCGG GCGGCCTGCG CCGAAGATGC TCCTGCCCTG TGGAAGCCCC ATATCCACGC CACCAGCGTT GTCTGCGGTG AAAGTGTGCT TTTCAAGGTG TACCGCCGCA TGGACGAAGG TGTGAATCCG GATGTGGAAC TGCTGCGCTT TCTGACCGAA GAGGCGGGGT ATCCTCATGT GCCCGCGTAT ATGGGCGTTG TGGAGTACAG ACGGTCGCGC ACATCGTCCA TGGCTGTGGC CATGCTGCAT GAATATGTGC AGGCGCAGGG CGACGCACAG GAAATGTGCC GCGATATGGT ACGCAGGTTC TTTGACAGGG TGCTGGCCGC ACGGGGCGAG ATGGATATCC GTCCCCGGCT GTATGCCCGT TCTCCCGTGG AAGCCGCAGG AAGACCTTTG CCGCAGGAAT ACCGTGAACT TATGGGCGAT ATGGATTTTG CCGGCATGCA GCTGCTGGGC AGGCGTGTGG GCGAACTGCA CCGCGCGCTG GCGTTCAGCT CTGAAGACTC TGCTTTTGCT CCGGAGCCGT TTTCCACCCT GTATCAACGG TCTGTGTATC AGGGTATGCA AAGCCGGGTA AAGCAGGTCC TGACCCGTCT GGAACGTTCG CTTGCTTTGC TGCCGGAATC GGCCAGAGAC GATGCTGCGC GGGTGCTGGA ACTGCGCGAA GAAGCTTTGC GGCGCATGCG CGGTTTTCTT ACGCGCAAAC TTGATTGTCT GAAAATCAGG GTGCATGGCA ACCTGCATCT GGGCAATGTG CTGCGCAGCG GCAGAGAGTA TGTGATCGTG AACTTTGAGG GCAGGCCGGA CAAGTCTCTT TCCGAACGGA GGCTGAAGCG TTCACCCCTG CGCGATGTGG CAGATCTGGT ACGGTCGGTG CATTACACCG TGCTCACGGT GCTGATGCAT GAATCGGTTC TCCGGCCTGA AGACCGCGCG TTTCTTGAAC CCTGGGCCGA TTTGTGGCGC ATAGAAGCCT CAGGAGCTTT CATGACCACA TATCTTGAAG CCGTGGGCGG CAGCAGGCTG GTGCCCGAAA ATGAACAAGG CGTTCAGGTG CTGCTGGAAG CGTTTTTGCT GGAAAAAGCG TTTATGGAGC TTGATGCAGA ACTGAAAGCG CCTTCCGGCA TGGTGGGACT GCCGCTGGCT GCCATTATCA CCCTGCTGGG AGCAGAGGGC TGA
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Protein sequence | MSIMIEPAGL DPQWYRDAII YELHIKSFHD SDGDGMGDMA GLIEKLDYLQ DLGVTALWLL PFYPSPLRDD GYDIADYMSI NPDYGSMADF RKLLREAHSR GLRVITELVL NHTSDQHAWF RRARRAPAGS EERDFYVWSD TSDRYKDARI IFKDFEPSNW SWDPVARAYY WHRFYHHQPD LNYENPAVHK AMFRVIDFWL DMGVDGVRLD AVPYLYEEEG TNCENLPRTH DFLKALRSHI DSRFQGRMLL AEANQWPEDA ARYFGDGDSC HMAFHFPLMP RMFMAIEMED RHPVIDIMEQ TPELPDGCQW AIFLRNHDEL TLEMVTDEER DYMYRMYARD PRARINLGIR RRLAPLLGND RRRVELLNVL LFTMPGTPVL YYGDEIGMGD NYYLGDRDGV RTPMQWSADR NAGFSRSNPQ RLFLPVVIDP EYHYEAVNVE TQQSNKSSLL WWMKRIIAMR RRYTAFSRGG ISFLRPENSR VLAYMRSSGE EHVLVVTNLS RHAQAASLDL SGWEGYRPVE VFSNTRFPAV RQPAYTITLN PYGYYIFHMR REEAAEALTG LFSPPMLMPV SGARFLDVEV REALQRRVLP GYLTRRGLLG TSAVQLREAV ILEAVPVGGK GAPSWLLIVE ARYQERQPEW FGMLVSLLAG EPARQTVREA PVHLMCTFGE DAPEAVLVES FDASCRCGAL LQLVSRTQTV KGRHGELAVA PAGGTRGRVR AACAEDAPAL WKPHIHATSV VCGESVLFKV YRRMDEGVNP DVELLRFLTE EAGYPHVPAY MGVVEYRRSR TSSMAVAMLH EYVQAQGDAQ EMCRDMVRRF FDRVLAARGE MDIRPRLYAR SPVEAAGRPL PQEYRELMGD MDFAGMQLLG RRVGELHRAL AFSSEDSAFA PEPFSTLYQR SVYQGMQSRV KQVLTRLERS LALLPESARD DAARVLELRE EALRRMRGFL TRKLDCLKIR VHGNLHLGNV LRSGREYVIV NFEGRPDKSL SERRLKRSPL RDVADLVRSV HYTVLTVLMH ESVLRPEDRA FLEPWADLWR IEASGAFMTT YLEAVGGSRL VPENEQGVQV LLEAFLLEKA FMELDAELKA PSGMVGLPLA AIITLLGAEG
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