Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dde_2200 |
Symbol | |
ID | 3757210 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Desulfovibrio desulfuricans subsp. desulfuricans str. G20 |
Kingdom | Bacteria |
Replicon accession | NC_007519 |
Strand | - |
Start bp | 2240122 |
End bp | 2242107 |
Gene Length | 1986 bp |
Protein Length | 661 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 637783090 |
Product | 1-deoxy-D-xylulose-5-phosphate synthase |
Protein accession | YP_388692 |
Protein GI | 78357243 |
COG category | [H] Coenzyme transport and metabolism [I] Lipid transport and metabolism |
COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCACACTG CGTGTCACGT TGTGTGCCGG TTTTCAGGCA TTGCCGCAGT GATAACGGGA CAGAAGGGAA TGAGCCAGAC AGGCATGACA ATAGATAATG TGCTGGATTC GATTCAGCAC CCTACGGATG TGGCTAAACT GGATGCCGAC CAACTGCGGC AGCTGGCAGA TGAACTGCGC GAACGCATCA TCGGCACGGT TTCGCAGAAC GGCGGTCATC TGGCGCCTTC GCTCGGAGTG GTGGAGCTGA CGCTGGCGCT GCTGTCGGTT TTCAATCCCG ACAAGGACAA ATTTGTCTGG GATGTGGGGC ATCAGGCCTA TGCATGGAAG CTGCTGACGG GCAGGCGCGA TGAATTTTCC ACGCTGCGGC AGTATCAGGG GATCAGCGGT TTTCCCAAAA TGGCGGAAAG TCCCTACGAT CATTTCGGGG TGGGGCATTC TTCCACGTCC ATATCGGCTG CGGCGGGCAT GGCCATGGCC CGCGATCTGG CCGGAGATGA CAACGATGTC ATAGCCATCA TCGGTGACGG TTCCATGACC GCGGGGCTGG CTTTTGAAGG ACTTAATCAG GCGGGGCATC AGGGGCGGCG GCTTCTGGTC ATCCTGAATG ATAATGAAAT GTCCATATCA AAGAATGTCG GCGCGTTATC TCTTTTTCTC AGCCGTAATC TTTCTTCGCG CTGGGTGCGC CGCATGAAGC GCGATGTGGA AACCTGGCTT AAGTCGGTAC CGGGCATAGG TGAAGAAATG CTCAACTATG CCAAGCGCAG CGAGCACAGC CTGAAAAGCT TTTTTACGCC CGGTATGTTG TTTGAAGCCT TCCGGTTCAA CTATGTGGGA CCGGTGGACG GCCATGATGT GCGCAATCTT GCCAAGGTGA TGCAGATGGC GCGTGCTCTG GATGAGCCGG TGCTGCTGCA TGTGCTGACC AAAAAAGGCA AAGGTTATGA ACCGGCTGAA AGCAACCCCA CCTATTTTCA CGGGGTGGGC CGGTTTGAAC TGGAAACCGG TGCCGCGTGT AAATTTGTGG ATTCGGATTC ACTGCCTTCG TATACCGAAG TGTTCGGCAG CACATTGTGC AGTCTGGCGG AAAAAGACGA GCGTGTGATC GCCATTACCG CCGCCATGCC CGAAGGCACA GGAGTGGGCG AATTCAGCCG ACGTTTTCCT GACAGGTTTG TGGATGTGGG CATCTGCGAG CAGCATGCCG TCACGTTTGC AGCCGGTCTT GCTGCGCAGG GATTCCGGCC CGTGGTGGCC ATTTATTCCA CTTTTCTCCA GCGGTCGTAT GACCAGATCG TGCATGATGT GTGTCTGCAG AAGCTGCCTG TGACGTTCTG TCTGGACAGA GGCGGGCTTG TAGGTGAAGA CGGTCCGACA CACCATGGTG CTTTTGACCT GAGTTATTTG CGGCATATTC CCAATCTGAC CATCATTGCC CCCAAGGACG AGGCCGAATT GCAGCAGGCC ATGAAGACGG CTCTGGCCGG TGAAGGACCT GTGGCCATAC GCTATCCCCG CGGCATCGGT GTGGGAGCCT GTCTTTCCGC CGACCCCGGA GTGCTGGAAC ACGGCAGGGG AGAGCTGCTC AAAAAGGGAG CGGATGTTGC TGTCATCGCA GTGGGCAGCA GGGTGCATCC CGCGCTGGCG GTGGCCGAAG AAATAGAGCG CTCCACCGGC AAGGCTGTTT CTGTTTTCAA CGCGCGTTTT GTGAAGCCTC TTGACGCGGA GCAGCTTGTG GCGCTGGCCC GCAGCCATGA CAGCCTGCTG CTGCTTGAAG AGAACACAAC AACCGGCGGT TTTTCCTCCG GTGTGCTGGA GCTGCTGGCC GATCACGACT GTCTTGCCGG CGTGCACGTG CGCCGGTTGG GGTTGCCGGA TGATTTTGTG ACGCACGGTA CTCAGAAACA GCTTCGTAAG CTCACCGGCA TAGACCGCGC GGCCATCCGC CGGACCCTGC TGGAAATGCT CGGGCTTCAG GAGTGA
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Protein sequence | MHTACHVVCR FSGIAAVITG QKGMSQTGMT IDNVLDSIQH PTDVAKLDAD QLRQLADELR ERIIGTVSQN GGHLAPSLGV VELTLALLSV FNPDKDKFVW DVGHQAYAWK LLTGRRDEFS TLRQYQGISG FPKMAESPYD HFGVGHSSTS ISAAAGMAMA RDLAGDDNDV IAIIGDGSMT AGLAFEGLNQ AGHQGRRLLV ILNDNEMSIS KNVGALSLFL SRNLSSRWVR RMKRDVETWL KSVPGIGEEM LNYAKRSEHS LKSFFTPGML FEAFRFNYVG PVDGHDVRNL AKVMQMARAL DEPVLLHVLT KKGKGYEPAE SNPTYFHGVG RFELETGAAC KFVDSDSLPS YTEVFGSTLC SLAEKDERVI AITAAMPEGT GVGEFSRRFP DRFVDVGICE QHAVTFAAGL AAQGFRPVVA IYSTFLQRSY DQIVHDVCLQ KLPVTFCLDR GGLVGEDGPT HHGAFDLSYL RHIPNLTIIA PKDEAELQQA MKTALAGEGP VAIRYPRGIG VGACLSADPG VLEHGRGELL KKGADVAVIA VGSRVHPALA VAEEIERSTG KAVSVFNARF VKPLDAEQLV ALARSHDSLL LLEENTTTGG FSSGVLELLA DHDCLAGVHV RRLGLPDDFV THGTQKQLRK LTGIDRAAIR RTLLEMLGLQ E
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