Gene Dde_2200 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDde_2200 
Symbol 
ID3757210 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfovibrio desulfuricans subsp. desulfuricans str. G20 
KingdomBacteria 
Replicon accessionNC_007519 
Strand
Start bp2240122 
End bp2242107 
Gene Length1986 bp 
Protein Length661 aa 
Translation table11 
GC content57% 
IMG OID637783090 
Product1-deoxy-D-xylulose-5-phosphate synthase 
Protein accessionYP_388692 
Protein GI78357243 
COG category[H] Coenzyme transport and metabolism
[I] Lipid transport and metabolism 
COG ID[COG1154] Deoxyxylulose-5-phosphate synthase 
TIGRFAM ID[TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCACACTG CGTGTCACGT TGTGTGCCGG TTTTCAGGCA TTGCCGCAGT GATAACGGGA 
CAGAAGGGAA TGAGCCAGAC AGGCATGACA ATAGATAATG TGCTGGATTC GATTCAGCAC
CCTACGGATG TGGCTAAACT GGATGCCGAC CAACTGCGGC AGCTGGCAGA TGAACTGCGC
GAACGCATCA TCGGCACGGT TTCGCAGAAC GGCGGTCATC TGGCGCCTTC GCTCGGAGTG
GTGGAGCTGA CGCTGGCGCT GCTGTCGGTT TTCAATCCCG ACAAGGACAA ATTTGTCTGG
GATGTGGGGC ATCAGGCCTA TGCATGGAAG CTGCTGACGG GCAGGCGCGA TGAATTTTCC
ACGCTGCGGC AGTATCAGGG GATCAGCGGT TTTCCCAAAA TGGCGGAAAG TCCCTACGAT
CATTTCGGGG TGGGGCATTC TTCCACGTCC ATATCGGCTG CGGCGGGCAT GGCCATGGCC
CGCGATCTGG CCGGAGATGA CAACGATGTC ATAGCCATCA TCGGTGACGG TTCCATGACC
GCGGGGCTGG CTTTTGAAGG ACTTAATCAG GCGGGGCATC AGGGGCGGCG GCTTCTGGTC
ATCCTGAATG ATAATGAAAT GTCCATATCA AAGAATGTCG GCGCGTTATC TCTTTTTCTC
AGCCGTAATC TTTCTTCGCG CTGGGTGCGC CGCATGAAGC GCGATGTGGA AACCTGGCTT
AAGTCGGTAC CGGGCATAGG TGAAGAAATG CTCAACTATG CCAAGCGCAG CGAGCACAGC
CTGAAAAGCT TTTTTACGCC CGGTATGTTG TTTGAAGCCT TCCGGTTCAA CTATGTGGGA
CCGGTGGACG GCCATGATGT GCGCAATCTT GCCAAGGTGA TGCAGATGGC GCGTGCTCTG
GATGAGCCGG TGCTGCTGCA TGTGCTGACC AAAAAAGGCA AAGGTTATGA ACCGGCTGAA
AGCAACCCCA CCTATTTTCA CGGGGTGGGC CGGTTTGAAC TGGAAACCGG TGCCGCGTGT
AAATTTGTGG ATTCGGATTC ACTGCCTTCG TATACCGAAG TGTTCGGCAG CACATTGTGC
AGTCTGGCGG AAAAAGACGA GCGTGTGATC GCCATTACCG CCGCCATGCC CGAAGGCACA
GGAGTGGGCG AATTCAGCCG ACGTTTTCCT GACAGGTTTG TGGATGTGGG CATCTGCGAG
CAGCATGCCG TCACGTTTGC AGCCGGTCTT GCTGCGCAGG GATTCCGGCC CGTGGTGGCC
ATTTATTCCA CTTTTCTCCA GCGGTCGTAT GACCAGATCG TGCATGATGT GTGTCTGCAG
AAGCTGCCTG TGACGTTCTG TCTGGACAGA GGCGGGCTTG TAGGTGAAGA CGGTCCGACA
CACCATGGTG CTTTTGACCT GAGTTATTTG CGGCATATTC CCAATCTGAC CATCATTGCC
CCCAAGGACG AGGCCGAATT GCAGCAGGCC ATGAAGACGG CTCTGGCCGG TGAAGGACCT
GTGGCCATAC GCTATCCCCG CGGCATCGGT GTGGGAGCCT GTCTTTCCGC CGACCCCGGA
GTGCTGGAAC ACGGCAGGGG AGAGCTGCTC AAAAAGGGAG CGGATGTTGC TGTCATCGCA
GTGGGCAGCA GGGTGCATCC CGCGCTGGCG GTGGCCGAAG AAATAGAGCG CTCCACCGGC
AAGGCTGTTT CTGTTTTCAA CGCGCGTTTT GTGAAGCCTC TTGACGCGGA GCAGCTTGTG
GCGCTGGCCC GCAGCCATGA CAGCCTGCTG CTGCTTGAAG AGAACACAAC AACCGGCGGT
TTTTCCTCCG GTGTGCTGGA GCTGCTGGCC GATCACGACT GTCTTGCCGG CGTGCACGTG
CGCCGGTTGG GGTTGCCGGA TGATTTTGTG ACGCACGGTA CTCAGAAACA GCTTCGTAAG
CTCACCGGCA TAGACCGCGC GGCCATCCGC CGGACCCTGC TGGAAATGCT CGGGCTTCAG
GAGTGA
 
Protein sequence
MHTACHVVCR FSGIAAVITG QKGMSQTGMT IDNVLDSIQH PTDVAKLDAD QLRQLADELR 
ERIIGTVSQN GGHLAPSLGV VELTLALLSV FNPDKDKFVW DVGHQAYAWK LLTGRRDEFS
TLRQYQGISG FPKMAESPYD HFGVGHSSTS ISAAAGMAMA RDLAGDDNDV IAIIGDGSMT
AGLAFEGLNQ AGHQGRRLLV ILNDNEMSIS KNVGALSLFL SRNLSSRWVR RMKRDVETWL
KSVPGIGEEM LNYAKRSEHS LKSFFTPGML FEAFRFNYVG PVDGHDVRNL AKVMQMARAL
DEPVLLHVLT KKGKGYEPAE SNPTYFHGVG RFELETGAAC KFVDSDSLPS YTEVFGSTLC
SLAEKDERVI AITAAMPEGT GVGEFSRRFP DRFVDVGICE QHAVTFAAGL AAQGFRPVVA
IYSTFLQRSY DQIVHDVCLQ KLPVTFCLDR GGLVGEDGPT HHGAFDLSYL RHIPNLTIIA
PKDEAELQQA MKTALAGEGP VAIRYPRGIG VGACLSADPG VLEHGRGELL KKGADVAVIA
VGSRVHPALA VAEEIERSTG KAVSVFNARF VKPLDAEQLV ALARSHDSLL LLEENTTTGG
FSSGVLELLA DHDCLAGVHV RRLGLPDDFV THGTQKQLRK LTGIDRAAIR RTLLEMLGLQ
E