| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dde_2122 |
|---|
| Symbol | |
|---|
| ID | 3757130 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfovibrio desulfuricans subsp. desulfuricans str. G20 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007519 |
|---|
| Strand | + |
|---|
| Start bp | 2171586 |
|---|
| End bp | 2173037 |
|---|
| Gene Length | 1452 bp |
|---|
| Protein Length | 483 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 637783010 |
|---|
| Product | TPR repeat-containing protein |
|---|
| Protein accession | YP_388614 |
|---|
| Protein GI | 78357165 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4783] Putative Zn-dependent protease, contains TPR repeats |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.318434 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCAGCAC CCGAGTTCAC CATTCCGCGT TACCGGCGCC CTGTGCGGCG CCGGTACGCG
GCTCTGCTAA TCGCAGTGCT CTGCCTGAAC CTTGTTCTGG CACCGCTTGC TGCCGCTCCG
GCGCACGCCT TCGGGTTTGG TGAATTCACT GTCAAAGACG AAATCGAACT GGGCAAAAAG
TTCAGAGTTC TTGTAAAATC CCGCCTGCCA ATCATTGAAG ATCCTGAAAT AGCAGATTAT
GTGCGGGAAC TTGTGGCCCG TCTGCAGGCC GTCATTCCGC CTCAGCCTTT TCCTTTTGAA
ACCAGCGTGG TGCTGGACAA TAACATGAAC GCATTCGCCA CGCCCGGCGG ATACGTTTTT
GTCTACACCG GTCTGCTGCT CAATCTTGAA AACGAATCGG AAGTTGCGGG GGTGCTGGCC
CACGAACTGG CGCACGTGAC CCAGCGCCAT GTGGCCAAAC GCATCGAGGC CGCACAAAAA
GTCAGTCTGC TGTCCATGGC CGGACTGCTG GCCGGTTTGC TGCTGGGCAA AGGGGAAGCC
AAGGACGCCA TGCTTTTCGG CACTGCCGCG GCCACTCAGG CCGCCATGCT CAACTACAGC
CGCACAGATG AGCGCGAAGC CGACCAGATG GGTATGCAGT ACCTGATCAA GGCGGGTTTT
TCACCCTGGG GATTGCCCGG CGCCTTCAAA CACATTCAGA ACCAGCAGTG GCGCAGCGGC
GGCGGTGTGC CGCAATATCT CAGCACACAC CCCGACGTAC AGCAGCGTAT ACAGTATCTG
AGCAATCAGG TCCGCCTGCT GCCCGCTGCC CAGCGCGAAA TCAAAGATGA CAACACCCGC
TTCCGGCGCA TCCAGACCCT TATCAGGGCC CGCTTTGCCG ATCAGGAAGC AGCAATGCAC
TATTTCAACA ATTCCGGAAC ACTGCCGCCG GAACTGGCCC TTATGGGCAA AGGCATTGTC
TACGCGCGGC AGAACAAAAT CTCCACCGCA GCGGAATTTT TTGATCAGGC AGTCAGCCTT
GCGCCTTCAG ACGCTCTCGT CCTGCGTGAG GCCGGGCGCT TCCATTATAA TAAAGGAGAC
AGCAAGCGCG CAGCAGGACT GCTGCAGCGG GCAGTGATGA ACAACCCGCA CGACCTGATG
GCGCTGTTTT TCTTTGCACG GCTGCTGGCA GACAACGGAC AGGTGGATAA AGCCGTGGAA
TACTACCGGC AGGTATTACA GAAACTGCCC GAAGACTCAG AAGTTCACTA CTACTACGGG
CGCATGCTCG GAGAAAACAA CCGATTGTTT GAAGGTCATC TGCAGCTGGC ATACAGCGCA
CTCTACGCCA ACAACAAACG CAAAGTGGAA TTTCACCGCA AGCAGGCGGA AACACTTGCC
CGCACAGAGG ATGACAAGGC CGAACTGGAA CGGTTTGACA CCCGTCATGC AGAACGTGCG
GAGTTCTGGT AG
|
|---|
| Protein sequence | MAAPEFTIPR YRRPVRRRYA ALLIAVLCLN LVLAPLAAAP AHAFGFGEFT VKDEIELGKK
FRVLVKSRLP IIEDPEIADY VRELVARLQA VIPPQPFPFE TSVVLDNNMN AFATPGGYVF
VYTGLLLNLE NESEVAGVLA HELAHVTQRH VAKRIEAAQK VSLLSMAGLL AGLLLGKGEA
KDAMLFGTAA ATQAAMLNYS RTDEREADQM GMQYLIKAGF SPWGLPGAFK HIQNQQWRSG
GGVPQYLSTH PDVQQRIQYL SNQVRLLPAA QREIKDDNTR FRRIQTLIRA RFADQEAAMH
YFNNSGTLPP ELALMGKGIV YARQNKISTA AEFFDQAVSL APSDALVLRE AGRFHYNKGD
SKRAAGLLQR AVMNNPHDLM ALFFFARLLA DNGQVDKAVE YYRQVLQKLP EDSEVHYYYG
RMLGENNRLF EGHLQLAYSA LYANNKRKVE FHRKQAETLA RTEDDKAELE RFDTRHAERA
EFW
|
|---|
| |