Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dde_2052 |
Symbol | |
ID | 3757060 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Desulfovibrio desulfuricans subsp. desulfuricans str. G20 |
Kingdom | Bacteria |
Replicon accession | NC_007519 |
Strand | - |
Start bp | 2094872 |
End bp | 2096641 |
Gene Length | 1770 bp |
Protein Length | 589 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 637782940 |
Product | sigma-70 factor |
Protein accession | YP_388544 |
Protein GI | 78357095 |
COG category | [K] Transcription |
COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.0289381 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGGCAACA TTAAGGAAAT CCAGCAAATC AAGACCCTGA TTGCCAAAGG CAAGGTCGCG GGCTTTCTCA CGTTTGAGGA AGTTAACAAA GCTTTGCCGG CAGAGGTCAA CACGCCTGAG CAGATTGAAG AAATCATCGG GATTTTCGAT CAGCTTGATA TTGCGATTGT CGATTCTGAA AAAGACGGCA AAAAAATAAG CGTTTCCCCT GCCGAGGCAG ATGACGAAGG GGGTGACGGA GGGCTGGAGC TGACCGATGA AGACGATCCT GCCGACTATT CTTCGCGCAG TACAGACCCT GTAAGGATGT ACCTGCGGGA AATGGGCGCT GTGCCGTTGC TCGACCGTGA CGGTGAAGTG AACATTGCCA AGAAGATAGA GACCGGAGAG CAGGATGTTC TGTACGCTCT GGTGGAAGTT CCCATCGCTG TGGAAGAGCT TATTTCCGTG GGCGAAGACC TGAAGGAAAA CCGCATCAAA CTTAAGGATG TGGTTAAAAC CATCGAGGAA GACGACCCCA GCGAAGACGA GATGAACCAG CGGCAGCGGG TTATTTTGCT GCTGGATGAA ATCCAGTCTA CATTCAAGAA AAAACGCAAG GTTTATCAGC GTCTTGACGA GTGCTGTACG CTTGAGCGCC GCGTATATGG TATCCAGAAG GAAATTATCG CCTATAAAGA GGAGATAGTC TCCCGACTGC GCGACATCAA GCTGGAAAAA ACGCTTATCG ACCGTATTAT AGAAACGGTT GAAGACTATG TGCGTCAGAT GCATAACTGC CAGCGGGACC TTTCGGCATA TATATTGTCC ACCGGCAAGA CCCAGACGGA AATGCGCGAG CTGTTCCGTC AGCTGGACGA CCGCGAAATC AATCCGGTTG TGGCGGCAGA CAGCCTTAAT CTGACGGTTG AAGAGCTGTT TTCATTCAAG GAAATGATCA TGGGCAAAAT GGAAATCCTG AACAGGCTTC AGGAGAAATG CTGCCACAAC GTGACTGACC TTGAAGAAGT GCTCTGGCGT ATCAAGCGCG GAAACAGTCA TGCCATGCGT GCCAAGCAGG AACTTATCCG TTCCAACCTG CGCCTTGTGG TGAGCATCGC CAAAAAATAC ACCAACCGCG GTTTGCAGTT TCTTGACCTG ATTCAGGAAG GGAACATCGG CCTGATGAAA GCTGTGGACA AGTTCGAGTA TCAGCGCGGG TACAAGTTTT CGACCTACGC CACGTGGTGG ATCCGTCAGG CCATCACGCG CGCCATTGCA GATCAGGCGC GGACAATCCG TATTCCTGTG CATATGATCG AAACCATCAA CAAGCTGATC CGTACATCGC GTTATCTTGT TCAGGAACTC GGGCGTGACC CCACACCTGA AGAAATCGCC GAACGTATGG ATTACCCCAT CGACAAGGTG AAAAAGGTTC TGAAAATTGC CAAGGAACCC ATCTCCCTTG AAACGCCTAT CGGCGATGAA GAAGATTCGA GCCTCGGTGA TTTTATTGAA GACAAGAAAG CCGTTGCTCC TGCCGAAGAA GTGGTCAACA CCAAGCTGAG CGAGCAGATT GCCGCAGTGC TGGCTGATCT GACTCCCCGC GAAGAGCAGG TGCTGCGTAA GCGCTTCGGC ATCAACGAGA AGTCCGATCA CACTCTTGAG GAGGTCGGAA AGCTGTTTAA CGTGACACGA GAGCGCATCA GGCAGATAGA AGCCAAGGCG CTGCGCAAGC TCAGGCATCC GGTAAGGAGC CAGACCCTGC GCTCGTACTA CGAAAGCTAG
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Protein sequence | MGNIKEIQQI KTLIAKGKVA GFLTFEEVNK ALPAEVNTPE QIEEIIGIFD QLDIAIVDSE KDGKKISVSP AEADDEGGDG GLELTDEDDP ADYSSRSTDP VRMYLREMGA VPLLDRDGEV NIAKKIETGE QDVLYALVEV PIAVEELISV GEDLKENRIK LKDVVKTIEE DDPSEDEMNQ RQRVILLLDE IQSTFKKKRK VYQRLDECCT LERRVYGIQK EIIAYKEEIV SRLRDIKLEK TLIDRIIETV EDYVRQMHNC QRDLSAYILS TGKTQTEMRE LFRQLDDREI NPVVAADSLN LTVEELFSFK EMIMGKMEIL NRLQEKCCHN VTDLEEVLWR IKRGNSHAMR AKQELIRSNL RLVVSIAKKY TNRGLQFLDL IQEGNIGLMK AVDKFEYQRG YKFSTYATWW IRQAITRAIA DQARTIRIPV HMIETINKLI RTSRYLVQEL GRDPTPEEIA ERMDYPIDKV KKVLKIAKEP ISLETPIGDE EDSSLGDFIE DKKAVAPAEE VVNTKLSEQI AAVLADLTPR EEQVLRKRFG INEKSDHTLE EVGKLFNVTR ERIRQIEAKA LRKLRHPVRS QTLRSYYES
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