Gene Dde_1980 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDde_1980 
Symbol 
ID3756986 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfovibrio desulfuricans subsp. desulfuricans str. G20 
KingdomBacteria 
Replicon accessionNC_007519 
Strand+ 
Start bp2025916 
End bp2026575 
Gene Length660 bp 
Protein Length219 aa 
Translation table11 
GC content54% 
IMG OID637782866 
Producttranscriptional regulator, putative 
Protein accessionYP_388472 
Protein GI78357023 
COG category[K] Transcription 
COG ID[COG2932] Predicted transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.00751555 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGAGAAGC TGTCTTTTGA TACATTCTTC CGGCGCGTGA AAGAATCGAC CGAAATAAAC 
ACCCAACAAG CGCTGGCCAG GGCGCTGGGG GTTAACAGGT CCGCCGTTTC ACAGGCCAAA 
CAGCGTGAAA AAGTGCCTGA GAAGTGGGTA CTGAAAATCG CACGCATGTT TGCGCTGTCC 
CCTGACTGGC TGGAATCAGG CTCTGGCAGC CATGCGCTCC GCACTGCCGC TTCCGACATG 
GCGGACGGAA TTTTCATTCC CGTACCTAAA GTGGAGGCAA AACTATCTGC GGGGGGCGGC 
TCGCTTGAAG TGGGCGCCAC TGCGACCGGA GAGCATCTGT TCCACAGTAC ATGGTTGCGC 
CGTAAAGGAA ATCCCGCAGA CATGGTACTG ATGGATGTGG TGGGAGACAG TATGGAACCG 
GAAATATTTG CAGGTGATAC TGTGCTTGTT GATCAGGGAA ACCAGACATT GCGCAACGGA 
GCCATTTTCG CCATGGGCGT GGATGACTCG GTACTTGTGA AGCGCGTACA AAGTGCCCCC 
GAAGGTCTGG TACTGCTCAG CGAAAACCCG TCATATTCTC CGGTGCTTCT TCAGGGCGAT 
GAAATTGAAA CTGTCAGGGT GATTGGCAAA GTCATCTGGA TAAGCAGAGA GTACCGCTGA
 
Protein sequence
MEKLSFDTFF RRVKESTEIN TQQALARALG VNRSAVSQAK QREKVPEKWV LKIARMFALS 
PDWLESGSGS HALRTAASDM ADGIFIPVPK VEAKLSAGGG SLEVGATATG EHLFHSTWLR 
RKGNPADMVL MDVVGDSMEP EIFAGDTVLV DQGNQTLRNG AIFAMGVDDS VLVKRVQSAP 
EGLVLLSENP SYSPVLLQGD EIETVRVIGK VIWISREYR