Gene Dde_1960 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDde_1960 
Symbol 
ID3756966 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfovibrio desulfuricans subsp. desulfuricans str. G20 
KingdomBacteria 
Replicon accessionNC_007519 
Strand
Start bp2007836 
End bp2009644 
Gene Length1809 bp 
Protein Length602 aa 
Translation table11 
GC content52% 
IMG OID637782846 
ProductLipid A export ATP-binding/permease protein MsbA 
Protein accessionYP_388452 
Protein GI78357003 
COG category[V] Defense mechanisms 
COG ID[COG1132] ABC-type multidrug transport system, ATPase and permease components 
TIGRFAM ID[TIGR02203] lipid A export permease/ATP-binding protein MsbA 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.281863 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCTACAG CACAGCGAGA GCAGCACACA AAAAAATCGG AAGGGCGCAT ACTCTTCCGC 
CGGATACTCG GTTACTTCAG TTCCTACAAG CTTCATATAA CCATTGCCAC GCTGGGCATG
CTTTCAGTGG CTGCGTGCAC CGGTGCTGCC GCGTATCTGG TCAAACCGGC GCTGGACGAC
ATATTCATCA GCAAAAACGA AACCATGCTG CTGCTTGTGC CCTTCGCCTA TATTGTCATC
ATAACCATCA AGGGCCTGGG GCGCTATGTT CAGAACTATT TCATGCGCTA CTGCGGGCTC
ATGGTGCTTG AACGCCTGCG TAACGAACTG TACCGGAAAA TAATCTGCCT TCCGACCCGC
TTTTACGAAG AAAATCAGGT CGGCATGCTG ATGTCCAGAA TAATAAACGA TGTCATGCTG
ATACGGGCAA GCCTGCCGTC TGTCGTCATG ATTGTACGAC AGGTGATCAC CATGTGCTGC
CTCATCGGGG TGGTGTTCTA TCAGGACTGG TTTCTTGCCA TATGGGCTGT GCTGGTACTG
CCGCTTGCGG CCTTTCCGTT CATCTACTTC GGCCGTAAAC TGCGTAAGCT GAGCCGGCGC
AACCAGAACA AACTTTCCGA CATCTCTATC TTTCTGCAGG AAATTTTCAG CGGCATCCGG
GTAGTCAAAG CCTTTGCCAC CGAAGACAAG GAAGCTGCGC GCTTCAAGCA GGAAAACAAC
CGCCTTGTCA AAATAGCCAT TAAAGAAACC GTCTTCAGCG AACTGTCTTC GCCTGTGATG
GAACTGATAG GTGCGGTGGG GATAGGACTT GTCATCTGGT ACGGCGGCAA ACAGGTGATA
GACGGCGTTT CCACACCGGG AACGTTTTTC TCGTTCGTTG CCGGACTGGT CATGTTATAC
GACCCTGTAA AAAGCCTGAA CTCGGCAAAC ATGGACATCC AGCGGGCTCT GGCCGGTGCT
GAAAGGGTAT TTGAAATCCT TGATTCCAAA GATATTGTTG TAGAAAAAGA CGGCACCGTA
CCTTTTTCCG GCAGCTTTGA AGAAATTCGG TTTGAAAACC TGACGTTTCA CTACGAAGGC
TGTCCCGCCC CCGTGCTGGA CAACATAAAC CTGACCGTCA GACAAGGAGA ACGGGTTGCC
ATTGTTGGCC CCAGCGGGGC CGGAAAAACG ACCTTTGTCA ACCTGATACC GCGTTTTTAT
GAACAGACAG AGGGCCGGAT TCTGCTGAAC GGAACAGATA TCAGAGAATA CACCCTGGCC
ACACTGCGTC GTAACGTGGC CATGGTGTCG CAGGATTCTT TCCTTTTTAA TATTCCTGTA
ATGGAAAACA TTGCCTACGG CATGGAAAGC ACCTCGGAAG AAGCAGTTTA CGAAGCAGCC
CGTGCGGCAT ACGCACACGA TTTCATCCTG CAGCTTAAAG ACGGGTACCA GACCGTCATC
GGCGAAAGAG GCGTAAAGCT TTCCGGCGGG CAGAAACAGC GGCTTACCAT CGCACGGGCG
ATTCTTAAGG ACGCTCCGCT GCTGATTCTG GATGAAGCAA CCAGCGCACT TGATTCCGAG
TCGGAACGCA TTGTCCAGAA AGCACTGGAA AATCTGATGG CACACCGGAC GAGCATAGTC
ATTGCGCATC GTCTTTCCAC CATTCTCGGA GCAGACAGAA TTCTGGTGAT GGAGAAGGGC
AGGATAGTGT CGCAGGGACG TCATGAAGAC CTGCTGGGAT CGTGCCCGCT GTACACACGT
CTGTACAATA TGCAGTTTCA GACAGAGCAT ACAACCGAAG ACAACGGTTG TGCACTGCCG
CAGGCATAA
 
Protein sequence
MSTAQREQHT KKSEGRILFR RILGYFSSYK LHITIATLGM LSVAACTGAA AYLVKPALDD 
IFISKNETML LLVPFAYIVI ITIKGLGRYV QNYFMRYCGL MVLERLRNEL YRKIICLPTR
FYEENQVGML MSRIINDVML IRASLPSVVM IVRQVITMCC LIGVVFYQDW FLAIWAVLVL
PLAAFPFIYF GRKLRKLSRR NQNKLSDISI FLQEIFSGIR VVKAFATEDK EAARFKQENN
RLVKIAIKET VFSELSSPVM ELIGAVGIGL VIWYGGKQVI DGVSTPGTFF SFVAGLVMLY
DPVKSLNSAN MDIQRALAGA ERVFEILDSK DIVVEKDGTV PFSGSFEEIR FENLTFHYEG
CPAPVLDNIN LTVRQGERVA IVGPSGAGKT TFVNLIPRFY EQTEGRILLN GTDIREYTLA
TLRRNVAMVS QDSFLFNIPV MENIAYGMES TSEEAVYEAA RAAYAHDFIL QLKDGYQTVI
GERGVKLSGG QKQRLTIARA ILKDAPLLIL DEATSALDSE SERIVQKALE NLMAHRTSIV
IAHRLSTILG ADRILVMEKG RIVSQGRHED LLGSCPLYTR LYNMQFQTEH TTEDNGCALP
QA