Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dde_1960 |
Symbol | |
ID | 3756966 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Desulfovibrio desulfuricans subsp. desulfuricans str. G20 |
Kingdom | Bacteria |
Replicon accession | NC_007519 |
Strand | + |
Start bp | 2007836 |
End bp | 2009644 |
Gene Length | 1809 bp |
Protein Length | 602 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 637782846 |
Product | Lipid A export ATP-binding/permease protein MsbA |
Protein accession | YP_388452 |
Protein GI | 78357003 |
COG category | [V] Defense mechanisms |
COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
TIGRFAM ID | [TIGR02203] lipid A export permease/ATP-binding protein MsbA |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.281863 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCTACAG CACAGCGAGA GCAGCACACA AAAAAATCGG AAGGGCGCAT ACTCTTCCGC CGGATACTCG GTTACTTCAG TTCCTACAAG CTTCATATAA CCATTGCCAC GCTGGGCATG CTTTCAGTGG CTGCGTGCAC CGGTGCTGCC GCGTATCTGG TCAAACCGGC GCTGGACGAC ATATTCATCA GCAAAAACGA AACCATGCTG CTGCTTGTGC CCTTCGCCTA TATTGTCATC ATAACCATCA AGGGCCTGGG GCGCTATGTT CAGAACTATT TCATGCGCTA CTGCGGGCTC ATGGTGCTTG AACGCCTGCG TAACGAACTG TACCGGAAAA TAATCTGCCT TCCGACCCGC TTTTACGAAG AAAATCAGGT CGGCATGCTG ATGTCCAGAA TAATAAACGA TGTCATGCTG ATACGGGCAA GCCTGCCGTC TGTCGTCATG ATTGTACGAC AGGTGATCAC CATGTGCTGC CTCATCGGGG TGGTGTTCTA TCAGGACTGG TTTCTTGCCA TATGGGCTGT GCTGGTACTG CCGCTTGCGG CCTTTCCGTT CATCTACTTC GGCCGTAAAC TGCGTAAGCT GAGCCGGCGC AACCAGAACA AACTTTCCGA CATCTCTATC TTTCTGCAGG AAATTTTCAG CGGCATCCGG GTAGTCAAAG CCTTTGCCAC CGAAGACAAG GAAGCTGCGC GCTTCAAGCA GGAAAACAAC CGCCTTGTCA AAATAGCCAT TAAAGAAACC GTCTTCAGCG AACTGTCTTC GCCTGTGATG GAACTGATAG GTGCGGTGGG GATAGGACTT GTCATCTGGT ACGGCGGCAA ACAGGTGATA GACGGCGTTT CCACACCGGG AACGTTTTTC TCGTTCGTTG CCGGACTGGT CATGTTATAC GACCCTGTAA AAAGCCTGAA CTCGGCAAAC ATGGACATCC AGCGGGCTCT GGCCGGTGCT GAAAGGGTAT TTGAAATCCT TGATTCCAAA GATATTGTTG TAGAAAAAGA CGGCACCGTA CCTTTTTCCG GCAGCTTTGA AGAAATTCGG TTTGAAAACC TGACGTTTCA CTACGAAGGC TGTCCCGCCC CCGTGCTGGA CAACATAAAC CTGACCGTCA GACAAGGAGA ACGGGTTGCC ATTGTTGGCC CCAGCGGGGC CGGAAAAACG ACCTTTGTCA ACCTGATACC GCGTTTTTAT GAACAGACAG AGGGCCGGAT TCTGCTGAAC GGAACAGATA TCAGAGAATA CACCCTGGCC ACACTGCGTC GTAACGTGGC CATGGTGTCG CAGGATTCTT TCCTTTTTAA TATTCCTGTA ATGGAAAACA TTGCCTACGG CATGGAAAGC ACCTCGGAAG AAGCAGTTTA CGAAGCAGCC CGTGCGGCAT ACGCACACGA TTTCATCCTG CAGCTTAAAG ACGGGTACCA GACCGTCATC GGCGAAAGAG GCGTAAAGCT TTCCGGCGGG CAGAAACAGC GGCTTACCAT CGCACGGGCG ATTCTTAAGG ACGCTCCGCT GCTGATTCTG GATGAAGCAA CCAGCGCACT TGATTCCGAG TCGGAACGCA TTGTCCAGAA AGCACTGGAA AATCTGATGG CACACCGGAC GAGCATAGTC ATTGCGCATC GTCTTTCCAC CATTCTCGGA GCAGACAGAA TTCTGGTGAT GGAGAAGGGC AGGATAGTGT CGCAGGGACG TCATGAAGAC CTGCTGGGAT CGTGCCCGCT GTACACACGT CTGTACAATA TGCAGTTTCA GACAGAGCAT ACAACCGAAG ACAACGGTTG TGCACTGCCG CAGGCATAA
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Protein sequence | MSTAQREQHT KKSEGRILFR RILGYFSSYK LHITIATLGM LSVAACTGAA AYLVKPALDD IFISKNETML LLVPFAYIVI ITIKGLGRYV QNYFMRYCGL MVLERLRNEL YRKIICLPTR FYEENQVGML MSRIINDVML IRASLPSVVM IVRQVITMCC LIGVVFYQDW FLAIWAVLVL PLAAFPFIYF GRKLRKLSRR NQNKLSDISI FLQEIFSGIR VVKAFATEDK EAARFKQENN RLVKIAIKET VFSELSSPVM ELIGAVGIGL VIWYGGKQVI DGVSTPGTFF SFVAGLVMLY DPVKSLNSAN MDIQRALAGA ERVFEILDSK DIVVEKDGTV PFSGSFEEIR FENLTFHYEG CPAPVLDNIN LTVRQGERVA IVGPSGAGKT TFVNLIPRFY EQTEGRILLN GTDIREYTLA TLRRNVAMVS QDSFLFNIPV MENIAYGMES TSEEAVYEAA RAAYAHDFIL QLKDGYQTVI GERGVKLSGG QKQRLTIARA ILKDAPLLIL DEATSALDSE SERIVQKALE NLMAHRTSIV IAHRLSTILG ADRILVMEKG RIVSQGRHED LLGSCPLYTR LYNMQFQTEH TTEDNGCALP QA
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