| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dde_1818 |
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| Symbol | secD |
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| ID | 3756821 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfovibrio desulfuricans subsp. desulfuricans str. G20 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007519 |
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| Strand | + |
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| Start bp | 1868267 |
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| End bp | 1869859 |
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| Gene Length | 1593 bp |
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| Protein Length | 530 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 637782702 |
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| Product | preprotein translocase subunit SecD |
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| Protein accession | YP_388310 |
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| Protein GI | 78356861 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0342] Preprotein translocase subunit SecD |
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| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.00022831 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAGAGG GCCTGCGATG GAGAATCGCG CTCACACTCG TTGTGGCAGT GATGGGGCTG
GCCTATACAC TGCCTAGCAT TCCCGCCTTC AAATCCTCCC CGTTGCAGAA AATCCTGCCC
GACAACAAAG TCAGCCTCGG CCTTGACCTT ATGGGCGGTA TTCATCTGAC ACTGGGTGTA
GATGTGGACA AAGCGCTGGA AAACGCATTG TCCCAGACGG GAAATGATCT GCGTGAGATC
GCGCGTGACG AAGGAATTTT TCTTATGCGG CCCCGCGTGG TCGCAGGAGA CCGGCTGGAG
TTCATTCTGC TGAAAAAAGA GCAGCGGGGT GAACTGGATA GCCTGCTGAA AAAACAGTTC
GAAAGACTTA CTGTTTCGCC CCCTCAGGTG CTGAACGACG GCAGGGTGAA ATATTCTCTG
GCCTTCAGCT CTGAGTACAA AAAGTATCTT TCTAATCTGG CACTTGATCA GGCCGTTAAA
ACCATCCGCA ACCGTATTGA CCAGTTCGGC GTGGCCGAAC CCGACATACG CAAGCAGCAG
GACAACCGCA TTCAGGTGCA GCTGCCCGGC CTTAACGATC CGGAAAGGGC CATCCAGATC
ATCGGCAAAA CCGCCCACCT TGAGTTCAAG ATGGTGCGCG ACGATGTGGA TCCCGCCAAT
GTGGCCAGAG GCATTGTTCC GCCCGGAACT GAAATCCGCG AGATGCAGGA ACGGGGCGCC
TCGGGTGCCT CGATACCCGT TGTAGTCAAC CGCGAAGCGG TAATGACCGG CGAAAATATT
GTGGACGCCC GCGCCAGCTT CGACCAGTTC AACCAGCCCT ACGTCATCAT GACCTTCAAC
GACCGCGGGG CACGGATGTT TGAACTGGTG ACCGGTGAAA ACAAAGGTAA GCGGATGGCC
ATTGTGCTGG ACGGCAAAGT GTACTCCGCG CCTGTTATTC AGGAAAAAAT CAGAGGCGGG
CGGGCCAGCA TCACAGGCCG CTTCAGCGAT GCCGAAGCAC ACGACCTTGC GCTTGTGCTG
CGTGCCGGCG CATTGCCCGC ACCGGTGCAT ATTCTTGAAG AACGGTCTGT CGGCCCTTCG
CTGGGCCAGC AGTCCATTGA CCAGGGTGTC ACCGCGGCTC TGGCCGGCGG TGTGCTGGTG
GTCATATTCA TGGTTGTCTA CTACGGTTTC GCCGGTCTGG TTGCCAACGT GGCACTCAGT
TTCACTCTGG TGCTCATCCT TGCCGGCCTT GCCGGATTCG GGGCAACCCT GACGCTGCCG
GGCATTGCCG GCATCATCCT GACACTGGGG ATGGCCGTAG ACGCCAACGT ACTGATCTTC
GAACGAATCC GGGAAGAACT GCGTAAGGGG CTAACCCCCC GGGCAGCCAT TCAGGAAGGG
TACAGCAGGG CCACTCTGAC CATTGTGGAT GCCAACATCA CCACCATCAT AGCGGCTGTC
ATTCTGTATC AGTTCGGAAC CGGCCCGATA CGCGGTTTTG CCGTCACGCT GAGTCTCGGC
ATTCTGGCCT CCATGTTCAC CGCTATCTTT GTATCGCGCG TGCTTATGGA TATCTGGAGC
CTGAAACGCC AGGGCCGAAA GCTCAGCATC TAA
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| Protein sequence | MKEGLRWRIA LTLVVAVMGL AYTLPSIPAF KSSPLQKILP DNKVSLGLDL MGGIHLTLGV
DVDKALENAL SQTGNDLREI ARDEGIFLMR PRVVAGDRLE FILLKKEQRG ELDSLLKKQF
ERLTVSPPQV LNDGRVKYSL AFSSEYKKYL SNLALDQAVK TIRNRIDQFG VAEPDIRKQQ
DNRIQVQLPG LNDPERAIQI IGKTAHLEFK MVRDDVDPAN VARGIVPPGT EIREMQERGA
SGASIPVVVN REAVMTGENI VDARASFDQF NQPYVIMTFN DRGARMFELV TGENKGKRMA
IVLDGKVYSA PVIQEKIRGG RASITGRFSD AEAHDLALVL RAGALPAPVH ILEERSVGPS
LGQQSIDQGV TAALAGGVLV VIFMVVYYGF AGLVANVALS FTLVLILAGL AGFGATLTLP
GIAGIILTLG MAVDANVLIF ERIREELRKG LTPRAAIQEG YSRATLTIVD ANITTIIAAV
ILYQFGTGPI RGFAVTLSLG ILASMFTAIF VSRVLMDIWS LKRQGRKLSI
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