Gene Dde_1558 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDde_1558 
Symbol 
ID3755997 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfovibrio desulfuricans subsp. desulfuricans str. G20 
KingdomBacteria 
Replicon accessionNC_007519 
Strand+ 
Start bp1577163 
End bp1577807 
Gene Length645 bp 
Protein Length214 aa 
Translation table11 
GC content55% 
IMG OID637782435 
Productthiamine-phosphate pyrophosphorylase 
Protein accessionYP_388050 
Protein GI78356601 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0352] Thiamine monophosphate synthase 
TIGRFAM ID[TIGR00693] thiamine-phosphate pyrophosphorylase 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value0.536172 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAGAATA ATATGGCTGA CTGGGATATC TACTGTCTGA CCGATGCCGG ACTTTCACGC 
GGGCGTGATA CCGTGGAGGT TGTCCGTGCC ATGCTGCAGG GCGGCGCCAG AGTGATACAA 
TATCGTGAAA AAGACAAAAA AGCCGGTGAA ATGCTGCGTG AATGCATGGA GATTCGCAAG 
CTGACCAGAG ATGCCGGTTG CTGCTTTATT GTCAACGATC ATATTGATGT GGCCATGCTG 
TGCGATGCGG ACGGCGTACA TGTGGGGCAG GAAGACATTC CCGTACCGGA AGTGCGTCGT 
CTTGTGGGCG ATGGAAAAAT CATCGGGCTT TCCACCCATT CGCCGGAGCA GTGCTGTGAC 
GCTGTTGCAC AGGGCGCTGA TTATATAGGG GTGGGGCCTG TTTTTTTCAC CCGTACCAAA 
AAAGATGTCT GTGCGCCTGT GGGGTTTGAA TACCTTGATT ATGTGGCTGC AAACCACACT 
GTGCCCTTTG TGGCCATAGG CGGCATCAAG GAACATAATA TCGAGGAAGT GGCGGCTCAC 
GGGGCGCGCT GCTGCGCGCT CGTTTCTGCC ATTACGGGAG CAGATGACAT AGCAGCCACC 
GTCGCCGGTC TGCGCGGCAG GTTGAGGAGT GCCTCCGGTC GCTGA
 
Protein sequence
MKNNMADWDI YCLTDAGLSR GRDTVEVVRA MLQGGARVIQ YREKDKKAGE MLRECMEIRK 
LTRDAGCCFI VNDHIDVAML CDADGVHVGQ EDIPVPEVRR LVGDGKIIGL STHSPEQCCD 
AVAQGADYIG VGPVFFTRTK KDVCAPVGFE YLDYVAANHT VPFVAIGGIK EHNIEEVAAH 
GARCCALVSA ITGADDIAAT VAGLRGRLRS ASGR