Gene Dde_1415 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDde_1415 
Symbol 
ID3756124 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfovibrio desulfuricans subsp. desulfuricans str. G20 
KingdomBacteria 
Replicon accessionNC_007519 
Strand
Start bp1433427 
End bp1434845 
Gene Length1419 bp 
Protein Length472 aa 
Translation table11 
GC content55% 
IMG OID637782293 
ProductType I secretion outer membrane protein, TolC 
Protein accessionYP_387909 
Protein GI78356460 
COG category[M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG1538] Outer membrane protein 
TIGRFAM ID[TIGR01844] type I secretion outer membrane protein, TolC family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000000596226 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGGTTATA CGCTATCCGT TTTCCCTATA CGTTGGAATA TTATTACCAA GGGTTCTGTC 
ATGTCACACA CTTGTTCACC ATTCTTAAGC GCCTGCAAAA ATGCGGTGCT GCTTTCCGCA
GCCGGAGTGT TTATGCTTTC CGGTCAAGCC TTTGCAGGAA CTTCTTTACA GCAAAGTGTG
GAAGCCACCC TGAAAAACAA CCCTGTAATC AAATCATTCA AAGAAGGCGT GAGCGCCGCA
AAACATGATG TGCGCGATGC CGAAGGCGGC TGGTTTCCCC GGCTCGACTT CAATGCAGGG
TACGGCGTGG AACAGGTGAA CGATGCGCTG ACCCGCACTG ACGGCCGCAA GAACCACTGG
GAAGAACGCA GCGACATAAC CACCACGCTT TCACAGCTGC TGTGGGACGG CGGCAAGGTG
AACAGCCAGA TAGGCATTCA GGAAGCGCGG CTGGCAAATG CAGACAGCCG ACTGACAGAC
AACGCGGAAG TACTCGCGCT GGAAGCCATC AGAGCGCACC TTGAGCTGTA CCGCCAGCGC
AATCTTGTTC TGCTGGCCGA ACAGAATGTT AAAAATCATG AAGACATTCT GAAATCGCAG
GAAGAGCGTC AGAGAATGGG TGCCACAAGT CTGGCTGACG TGTCGCAGAC CAAAGGACGT
CTTGCCCGTG CACAGGCATC GCTCAGCAAT GCCCGGCAGG AACTGCTGGT GGCGGAAGCC
AACTACAGAC GCATTGCCGG TACAGATGCT CCGGAGGTGG ACTGGGCCGA TAAACCGGCC
GGTGTGCCCG GCACGTTTGA TTCCGCACTG CAGCTCGCGC TGACCAGCAA CCCCAAGCTG
GCAGCCCAGC AGGCTGAAAT TCAGGAAAAT GAACAGCGCA TTCAGCTTGC ACGTTCCGAA
TACTACCCCA CCTTTACCGC TCAGGCTTCC AACACCTACA AGGATCAGGT GGAAAGCAGC
ACCACATGGG AAGTGGACAA CGCCCTGCAA CTGCGCGTTT CATGGAATAT TTTCCGCGGC
GGATCCGATC TGGCCGCAGA AAAAGCAGAA GGTGCCCGCA AGCGCCGTTC CATGATGGAC
CTGCAGAATA TCAATGAAGC CCTGATGCAG GAAACCAGCG ACACATGGAA TGCTCTGGAA
AACGCCCGTG AGCAGAAGCG GCTTTTCAAC GAAGCAGTTG AATACAACAC CCAGACCCGC
GACATGTATA TCGAGCAGTT CAGCGTGGGA CAGCGCAGCC TGCTGGACGT GCTGGATGCC
GAAAATGAGC TCTACAGCTC TTCCATCCAG CTGGTCACAG CCACGGTAAA CGAAATCGTG
GCCGAATACA GGCTGGTGGC GCTTGGCGGC AAACTGATAG AAACAGTCGG CCTCGATCCG
GCCATCTACA AACAGGAAAC CGCCGAACAG AACTCCTGA
 
Protein sequence
MGYTLSVFPI RWNIITKGSV MSHTCSPFLS ACKNAVLLSA AGVFMLSGQA FAGTSLQQSV 
EATLKNNPVI KSFKEGVSAA KHDVRDAEGG WFPRLDFNAG YGVEQVNDAL TRTDGRKNHW
EERSDITTTL SQLLWDGGKV NSQIGIQEAR LANADSRLTD NAEVLALEAI RAHLELYRQR
NLVLLAEQNV KNHEDILKSQ EERQRMGATS LADVSQTKGR LARAQASLSN ARQELLVAEA
NYRRIAGTDA PEVDWADKPA GVPGTFDSAL QLALTSNPKL AAQQAEIQEN EQRIQLARSE
YYPTFTAQAS NTYKDQVESS TTWEVDNALQ LRVSWNIFRG GSDLAAEKAE GARKRRSMMD
LQNINEALMQ ETSDTWNALE NAREQKRLFN EAVEYNTQTR DMYIEQFSVG QRSLLDVLDA
ENELYSSSIQ LVTATVNEIV AEYRLVALGG KLIETVGLDP AIYKQETAEQ NS