Gene Dde_1370 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDde_1370 
Symbol 
ID3756157 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfovibrio desulfuricans subsp. desulfuricans str. G20 
KingdomBacteria 
Replicon accessionNC_007519 
Strand
Start bp1389828 
End bp1391642 
Gene Length1815 bp 
Protein Length604 aa 
Translation table11 
GC content56% 
IMG OID637782250 
ProductN-acetylmuramoyl-L-alanine amidase 
Protein accessionYP_387866 
Protein GI78356417 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0860] N-acetylmuramoyl-L-alanine amidase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00690488 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCCGATGC ATCTCAGATT TTCATCACGC CTGCTGTGGC TCTGGCTGGT CATTGCGGTG 
TCTTTGGCGT GCCTTCCCGC TCCTGCGGGT GCCGCTTCGC TTGATGCCTC GTTCAACAGC
GCATGGCGCC AGTTTCATTC GCTCACCAAA GACGCCCGCA AAGGGAAATA CCGTGACAAC
TGGTTGCGCA TAGAACAGGA TTTCATGGAT GTGTACAAGC GGAGTCCGCG CGGCCCTCTT
GCACCCAAAT CACTGTACTA CGCAGGGCGA GTGCGCTCCG AACTGGGGGC CCGCTCATAT
CTCGCTTCTG ACTACAGGCG TGCTGTGGAG TATTTCCAGC GCCTTGCCAA CCGCTTTCCA
TCACATTCCT GGACAGATGA CGCGCTGTAC CGCGCCGCCG CCATATACAA GGACAGGCTG
GGTGATCATG GTACGGCCAG AAGCCTGCTG AACACCATTC TGCGCGACCA TCAGCAGGGC
GACATGTACT ACAAGGCCAT AGCATTGCAT CGCTCTCTGG ACGGAGGCAG CGGCGCTGCC
GGAGCCCCTT CCGCCTCTTC TGCGCCTGCG CCTGCTCCGG AGCCCGCGCC GGCTCCTGCA
CGCTCCGCTG CAGCTGATGA ACCCCTGAAG GCTTCTGAAA TAATCAAAGG GGGCACCGCC
AACAGCGGCG CTCCGGCCAC TCTGGTTGAC GTGCGCTACC AGTCCAGTGA TGATTACACC
CGTGTGGTGC TTGAATGCAG CAAGGAAGTC GCTTACCGGT ATCAGTTTCT GCCTGAAGAC
AAAAAGGCCT CCAAGCCGTT CCGTCTGTAT GTCGATCTGG AAAATGCATC GCACGGCAAA
CTGGTGCGGG CAAAGGAGAC CGTTGCGGAC GGTATTCTGC GGGAGGTGCG CACAGGTACG
CCGCGCCCCG GTGTGAGCAG GGTGGTTCTC GATTTTTCAT CTGTCCGTAA ATACAATGTC
TTTACGCTGG ATAACCCGTT CCGGGTGGTC ATCGATGTCA CTTCTCCGGA AGAAAAGGCG
CAGACTGCCG TAGCCGGTGC ACCCGCCAGC CGGCCCAGAC CGGCAACCCC CTACAAGGTG
CCTTCGGGCA GCAAAGAACA GGTTAAAGAC CTTGTGGAAC AGCTGGGGCT GACGCTTGAT
ACCATCATGA TAGATGCAGG GCACGGCGGC AAGGACCCCG GCACGCAGCA TAACGGTATA
CGCGAACGGG ACTATACGCT TAAGATGGCC AAAATAATTG GCGAAAAGCT TAAGAAAAAA
GGCTTCAACG TGGTGTACAC CCGCACAAAA GATGTGTTTG TGCCCCTTGA AGAACGCACG
GCCATGGCCA ACGTTAAAAA AGCAGACCTT TTTCTTTCCG TGCACATCAA CGCCAACAGA
AGTTCAAAAA TCCACGGATT TGAGACCTAC TATCTGAACC TTGCCCGCTC TGCCAGCGCC
GTGCGTGTGG CCGCGCGTGA AAACGCCGTC AGCGAAAAGC GCATCAGCGA TTTGCAGTTC
ATTCTCACTG ACCTTATGCT CAATTCAAAA ATGCAGGAAT CAAAAGATCT TGCAGAACTG
ATACAGAGTA ATGTCATCGG CACGGTAAAA GGTAAGTACG GTTACCCCAC GCGTGACAAC
GGAGTCCGCT CGGCGCCGTT TTATGTGCTT ATGGGCGCAA AAATGCCTTC TGTTCTTATG
GAACTGGGCT ACTGCACCAA CGATGCAGAA GCCCGTAGGC TCAAGTCTGA CAACTACCTT
AACCGTATGG CGGACGGCAT TGTGGCGGGC GTGGTGGCGT ACAAAAAGAA AATCAACAGG
TATGCATCCA TGTGA
 
Protein sequence
MPMHLRFSSR LLWLWLVIAV SLACLPAPAG AASLDASFNS AWRQFHSLTK DARKGKYRDN 
WLRIEQDFMD VYKRSPRGPL APKSLYYAGR VRSELGARSY LASDYRRAVE YFQRLANRFP
SHSWTDDALY RAAAIYKDRL GDHGTARSLL NTILRDHQQG DMYYKAIALH RSLDGGSGAA
GAPSASSAPA PAPEPAPAPA RSAAADEPLK ASEIIKGGTA NSGAPATLVD VRYQSSDDYT
RVVLECSKEV AYRYQFLPED KKASKPFRLY VDLENASHGK LVRAKETVAD GILREVRTGT
PRPGVSRVVL DFSSVRKYNV FTLDNPFRVV IDVTSPEEKA QTAVAGAPAS RPRPATPYKV
PSGSKEQVKD LVEQLGLTLD TIMIDAGHGG KDPGTQHNGI RERDYTLKMA KIIGEKLKKK
GFNVVYTRTK DVFVPLEERT AMANVKKADL FLSVHINANR SSKIHGFETY YLNLARSASA
VRVAARENAV SEKRISDLQF ILTDLMLNSK MQESKDLAEL IQSNVIGTVK GKYGYPTRDN
GVRSAPFYVL MGAKMPSVLM ELGYCTNDAE ARRLKSDNYL NRMADGIVAG VVAYKKKINR
YASM