Gene Dde_1275 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDde_1275 
Symbol 
ID3755009 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfovibrio desulfuricans subsp. desulfuricans str. G20 
KingdomBacteria 
Replicon accessionNC_007519 
Strand- 
Start bp1294265 
End bp1295275 
Gene Length1011 bp 
Protein Length336 aa 
Translation table11 
GC content56% 
IMG OID637782146 
ProductTRAP dicarboxylate transporter, DctP subunit 
Protein accessionYP_387771 
Protein GI78356322 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component 
TIGRFAM ID[TIGR00787] tripartite ATP-independent periplasmic transporter solute receptor, DctP family 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.0470295 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAACACC TATTGAAAGC AGGCGCACTG GTGGCGCTGG CGTGCATCGT GACCCTGACG 
GCAGGCGCAC AGGCGCATGC GGCAAAGCGT ATCAACATCC GTCTGGCGCA CCCCATGGCG 
CCGGGCAACA ATGTGACGGT AGGCTACGAA AAATTTAAGG AACTGGTTGC AGAAAAAAGC 
AACGGCCGTG TGCGCATCCA GCTGTTCGGC AACTGCATGC TGGGCAGCGA CCGTGTGACC 
ATGGAAGCCG CACAGCGCGG CACGCTGGAA ATGGCTTCCA GTTCTTCACC CAACATGGCC 
AACTTTTCCA AACAGTGGAT GGTGTTTGAC CTGCCCTACA TCACCAGCCC CGAGCATCAG 
CAAAAGCTGT ACAAAGCCAT CGATGACGGC GAACTGGGCA AAAAGCTGGA TGAAATAGCC 
GCCTCCATCG GTCTGAAGCC CATCATGTAC AGCGAATATG GTTACCGCAA TTTTGTAACC 
ACTAAAAAGC CCATCAAAAC CGCTGACGAT CTGAAAAACC TTAAGGTGCG TACCACCGAC 
TCACCCATTG AAGTGGCCGT GGCTGCCGCG CTGGGCATGG CTCCCACCCC CATTTCGTGG 
GGCGAGACCT ACACGGCTCT GCAGCAGGGC ACCGTGGACG GCGAAGGCAA CACATTCTCG 
CTGCTCAACG ACGCCAAGCA CACCGAAGTG CTGAAGTACG CAATAGATTC TGCCCACAAC 
TACAGCATGC ACCTGCTGAT GATGAACAAA GCCTACTACG ACAGCCTGCC TGCCAATGTG 
CAGCAGATTC TGACAGAAGC AGGCCGCGAA GCACTGACCT ATCAGCGCTC CATCACCAGC 
GAGCTTGAAA AGAAAGCGGA AGACGCATTC ATCGAACAGG GCATCACGGT GACCAGACTG 
AGCCCCGAAG AGCGCGCCAA GCTGGTCGAA CGCACCCGCC CCGTCTGGGA CAAGTTCAAA 
GACGACATTC CTGCCGAACT GATCAAACTG GTGCAGGAAA CCCAGCAGTA A
 
Protein sequence
MKHLLKAGAL VALACIVTLT AGAQAHAAKR INIRLAHPMA PGNNVTVGYE KFKELVAEKS 
NGRVRIQLFG NCMLGSDRVT MEAAQRGTLE MASSSSPNMA NFSKQWMVFD LPYITSPEHQ 
QKLYKAIDDG ELGKKLDEIA ASIGLKPIMY SEYGYRNFVT TKKPIKTADD LKNLKVRTTD 
SPIEVAVAAA LGMAPTPISW GETYTALQQG TVDGEGNTFS LLNDAKHTEV LKYAIDSAHN 
YSMHLLMMNK AYYDSLPANV QQILTEAGRE ALTYQRSITS ELEKKAEDAF IEQGITVTRL 
SPEERAKLVE RTRPVWDKFK DDIPAELIKL VQETQQ