| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dde_1082 |
|---|
| Symbol | secA |
|---|
| ID | 3755431 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfovibrio desulfuricans subsp. desulfuricans str. G20 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007519 |
|---|
| Strand | - |
|---|
| Start bp | 1111357 |
|---|
| End bp | 1113951 |
|---|
| Gene Length | 2595 bp |
|---|
| Protein Length | 864 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 637781952 |
|---|
| Product | preprotein translocase subunit SecA |
|---|
| Protein accession | YP_387578 |
|---|
| Protein GI | 161485608 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0653] Preprotein translocase subunit SecA (ATPase, RNA helicase) |
|---|
| TIGRFAM ID | [TIGR00963] preprotein translocase, SecA subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTCGGTT CCATTGTCAA AAAAGTCTTC GGTTCCAAAA ACGACCGTTA TCTCAAATCG
CTGAACCACT ACCTGAAAGA AATCAACGCG CTGGAAGAAA ACATCGCCAC CATGCCGGAC
GAGGCCATAT CCGCCCGTAT GGCCGAACTG CGCGCCGAAG TGCAGCAGGG CACGTCACTT
GACAGCATTC TGCCCGAGGT GTTTGCCATG GTGCGCGAAG CAGGCAAACG CGTGCTGGGA
ATGCGCCATT ACGACGTGCA GATGGTCGGC GGCATAGCCC TGCATTCCGG CAAAATAGCC
GAAATGCGTA CCGGTGAAGG TAAAACCCTT GTGGCCACGC TGCCCGCGGC TCTCAATGCG
CTGACCGGCA AAGGTGTGCA CCTGATCACC GTAAACGACT ATCTGGCCCG CCGTGACGCC
GAGTGGATGG GTAAAATCTA CAATTTTCTC GGGCTCAGCG TGGGAGTCAT AGTTCACGGG
CTTAACGATG AAGAACGCCG GGCGGCTTAT GCCTCGGACA TCACCTACGG CACAAACAAC
GAGTTCGGCT TCGATTACCT GCGCGACAAC ATGAAGTTCT ACAAAGAACA GCTTGTCCAG
CGCCCCCATC ATTTCGCCAT TGTCGACGAA GTTGACTCCA TTCTTATTGA CGAAGCCCGT
ACGCCGCTGA TCATTTCCGG CCCGTCCGAT GAATCCACGG GGCTGTACCG CCGCGTCAAC
GACATCATTC CGCGCCTGAA ACGCGATACA CACTACACCG TGGACGAAAA GGCCCGCGCC
GCGGCCCTGA CCGATGAAGG CGTGCAGGAA GCCGAAAAAC TGCTCGGGCT GGACAACCTG
TACGACCCGC AGAACATTTC CTTCCAGCAC CACATTCTGC AGGCGCTCAA GGCACACAGC
ATATTCACGC GCGATGTGGA CTACATCGTA AAAGACGATC AGGTCGTCAT TGTTGACGAA
TTCACCGGTC GACTGATGCC CGGACGCCGC TTTTCAGACG GACTGCATCA GGCGCTGGAG
GCCAAGGAAG GCGTAAAGGT GGAAGCCGAA AACCAGACGC TGGCATCCAT CACCTTCCAG
AACTACTTCC GCATGTATGA AAAACTGTCG GGCATGACAG GCACGGCAGA CACCGAAGCT
GTGGAATTCC AGCAGATATA TGATCTGGAA GTGGTCAATA TTCCCACCAA CAAACCCATG
ATACGTAAAG ACCAGCCCGA TTCCATATAC AGAACGCGGC CTGAAAAATT CAACGCCATC
GTGGAAGAAA TAGCCAGACT GCACCACAAG GGACAACCTG TGCTGGTGGG CACCATATCC
ATTGAAACAT CCGAGCTTAT CGCCGGCATG CTGAAGAAAA AAGGCGTGCC GCACAATGTG
CTGAACGCCA AACAACACGA AAAAGAAGCA GAAATCGTGG CAGAAGCAGG TCAGGCGGGC
AAAGTGACCA TTGCCACCAA CATGGCAGGC CGCGGTACCG ACATAGTGCT GGGTGAAGGT
GTGCCCCAGC TGGGCGGCCT GTACATTCTG GGTACGGAAC GCCACGAATC GCGGCGCATA
GACAACCAGC TGCGCGGCCG TTCCGGCCGT CAGGGCGACC CCGGCGAAAC ACGCTTTTTC
CTTTCGCTGG AAGATGACCT GCTGCGTCTT TTCGGCTCTG ACCGCATAGC CGGGCTTATG
GAAAGACTGG GCATGCAGGA AGGCGAACCC ATCGAAAACA AAATGGTTTC GCGCGCCATA
GAAAACGCCC AGAAACGTGT CGAAGGACAC AACTTTGAAA TACGCAAGAC CCTGCTCGAT
TATGACAACG TCATGAACCA GCAGCGCGAG GTCATATACA GCCTGCGCCG CGATACCATG
ATGGAAGACG ATCTTGAACC TTCGGTCCAT GAGTTTCTCG ACGATATCAT CGAGGACATC
TACGCACCGC TGGAGCAGAC CAAAGGCAAA GCCCTCGACG AAGAGACCCA TGCGGCCATC
GCCGCCCGGC TTGAAGAAAC CTTTTTCCTT TCACGCGTGT ACCCCGAATT CGCACTCAAG
GGTTCGGAAC AGCAGGAAAA GCTTCCGGAA TTGCCTTCCG CGGCAGATGT GAAGAAAGCG
GTGGAAAGCA TGCTGGAAAA ACTCAAACGC GATGCAGGGC CGGTCTACGG CGACATCCTG
CGCTATTTCC TGCTTGAAGA GCTGGACCGC AACTGGAAAG AACACCTGCT GAACATGGAC
CACCTGCGCG ACGGCATCGG CCTGCGCGGG TACGGTCAGC GCGACCCCAA GCAGGAGTAT
AAGCGCGAAG GCTTTTCACT TTTCCAGAAC ATGCTCTGGA GCATCAAGGA AAGCGTTTTC
CGTGCGCTCA CCCGCCTGCG GCTGCAGCGG GTGGAAGAAG CCGCCGATCC GGCAGAACAG
CCCGAAGCCG CGGGTCTGCA GGAAGCAAAA GCCACAGAAC TGCGCCACAA AGAACAACCC
GCCGAGCTGT CATATTCCGG CGGTGATGAG GACGGCGCAA AAACCCCTTC GCGGCGCAAC
GCCCCGAAAG TCGGCCGTAA TGATCCGTGC CCGTGCGGCA GCGGCAAAAA ATATAAAAAA
TGCTGCGGGG CCTGA
|
|---|
| Protein sequence | MLGSIVKKVF GSKNDRYLKS LNHYLKEINA LEENIATMPD EAISARMAEL RAEVQQGTSL
DSILPEVFAM VREAGKRVLG MRHYDVQMVG GIALHSGKIA EMRTGEGKTL VATLPAALNA
LTGKGVHLIT VNDYLARRDA EWMGKIYNFL GLSVGVIVHG LNDEERRAAY ASDITYGTNN
EFGFDYLRDN MKFYKEQLVQ RPHHFAIVDE VDSILIDEAR TPLIISGPSD ESTGLYRRVN
DIIPRLKRDT HYTVDEKARA AALTDEGVQE AEKLLGLDNL YDPQNISFQH HILQALKAHS
IFTRDVDYIV KDDQVVIVDE FTGRLMPGRR FSDGLHQALE AKEGVKVEAE NQTLASITFQ
NYFRMYEKLS GMTGTADTEA VEFQQIYDLE VVNIPTNKPM IRKDQPDSIY RTRPEKFNAI
VEEIARLHHK GQPVLVGTIS IETSELIAGM LKKKGVPHNV LNAKQHEKEA EIVAEAGQAG
KVTIATNMAG RGTDIVLGEG VPQLGGLYIL GTERHESRRI DNQLRGRSGR QGDPGETRFF
LSLEDDLLRL FGSDRIAGLM ERLGMQEGEP IENKMVSRAI ENAQKRVEGH NFEIRKTLLD
YDNVMNQQRE VIYSLRRDTM MEDDLEPSVH EFLDDIIEDI YAPLEQTKGK ALDEETHAAI
AARLEETFFL SRVYPEFALK GSEQQEKLPE LPSAADVKKA VESMLEKLKR DAGPVYGDIL
RYFLLEELDR NWKEHLLNMD HLRDGIGLRG YGQRDPKQEY KREGFSLFQN MLWSIKESVF
RALTRLRLQR VEEAADPAEQ PEAAGLQEAK ATELRHKEQP AELSYSGGDE DGAKTPSRRN
APKVGRNDPC PCGSGKKYKK CCGA
|
|---|
| |