| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dde_0858 |
|---|
| Symbol | |
|---|
| ID | 3755658 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfovibrio desulfuricans subsp. desulfuricans str. G20 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007519 |
|---|
| Strand | - |
|---|
| Start bp | 886595 |
|---|
| End bp | 887362 |
|---|
| Gene Length | 768 bp |
|---|
| Protein Length | 255 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 637781723 |
|---|
| Product | CRISPR-associated Cas1 family protein |
|---|
| Protein accession | YP_387354 |
|---|
| Protein GI | 78355905 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1518] Uncharacterized protein predicted to be involved in DNA repair |
|---|
| TIGRFAM ID | [TIGR00287] CRISPR-associated endonuclease Cas1
[TIGR03638] CRISPR-associated endonuclease Cas1, ECOLI subtype |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.41465 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGACGTGTA TTCTTCTGGA ACCGGGTACA CGCGTCAGTC ATGCCGCGGT TGTTCTTGCT
GCACGGTCAG GCACTCTTCT TGTCTGGACA GGAGAAGCCG GAGTGCGGTT ATACGCCTCC
GGCCAACCGG GCGGAGCGCG CAGCGACAAA CTGCTTTATC AGGCGAAGCT GGCTCTGGAT
GATACAGCCC GCCTTAAAGT TGTTCGGCGC ATGTTTGCCA TGCGCTTTCA GGAACAGGCA
CCGGACAGAC GCAGCGTTAA CCAGTTGCGC GGTCTGGAAG GGGCGCGGGT ACGGGCTCTT
TATAGCCTGC TTGCCAAACA ATATAAGGTG CCTTGGAAAG GCAGAAAATA TGACCCGAAG
GATTGGGAAT CCGGCGACCT GCCTAACCGT TGCATAAGTG CGGCCACAGC GTGCCTGTAT
GGAGTATGCG AAGCCGGAAT TCTGGCCGCT GGCTATGCTC CTGCCATTGG CTTTTTACAC
ACGGGCAAAC CCCAGAGCTT TGTGTATGAT ATAGCAGACC TGTTCAAATT CGAAACGGTA
GTTCCCGTCG CCTTTCGCGT GGCAGCAGGT AAACCCGTTA ACCCCGATCA GGCTGTCCGT
CTGGCATGCA GAGATATGTT CCGCAAAACA AAGCTGTTGC AACGCATCAT CCCCACTATT
GAAGAAGTGC TGGCCGCCGG TGAAATTGCC CCGCCTGAAA TTGAAGGAGT TGTTACGCCG
GCAATACAGG AAAAAGAGGG TATAGGCGAT GACGGTCATC GTGGTTGA
|
|---|
| Protein sequence | MTCILLEPGT RVSHAAVVLA ARSGTLLVWT GEAGVRLYAS GQPGGARSDK LLYQAKLALD
DTARLKVVRR MFAMRFQEQA PDRRSVNQLR GLEGARVRAL YSLLAKQYKV PWKGRKYDPK
DWESGDLPNR CISAATACLY GVCEAGILAA GYAPAIGFLH TGKPQSFVYD IADLFKFETV
VPVAFRVAAG KPVNPDQAVR LACRDMFRKT KLLQRIIPTI EEVLAAGEIA PPEIEGVVTP
AIQEKEGIGD DGHRG
|
|---|
| |