Gene Dde_0012 details

Gene Information

• Locus tag: Dde_0012
• Symbol: aspS
• ID: 3755954
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Desulfovibrio desulfuricans subsp. desulfuricans str. G20
• Kingdom: Bacteria
• Replicon accession: NC_007519
• Strand: +
• Start bp: 11670
• End bp: 13490
• Gene Length: 1821 bp
• Protein Length: 606 aa
• Translation table: 11
• GC content: 57%
• IMG OID: 637780865
• Product: aspartyl-tRNA synthetase
• Protein accession: YP_386508
• Protein GI: 78355059
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0173] Aspartyl-tRNA synthetase
• TIGRFAM ID: [TIGR00459] aspartyl-tRNA synthetase, bacterial type

Plasmid Coverage information

• Num covering plasmid clones: 6
• Plasmid unclonability p-value: 0.00181386
• Plasmid hitchhiking: No
• Plasmid clonability: decreased coverage

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGCGACC AGAATTTGGA CATTCAGCAG GATCACCAGA AATATGTGGA GTCTCTTGGC 
GATTGGGCGC GCACCAATAC GTGCGGTGAG CTGAATGCCA ATGCCATCGG GTCCGAAGTG 
TGCCTGATGG GCTGGGTTCA GTTTCGCCGT GACCACGGCG GCCTTATTTT TATCGATCTG 
CGCGACCGCA GCGGCCTGAC ACAGGTTGTG TTCAGCCCCG ATGTCAGCGT GGACGCGCAT 
GAGCGCGCTC ACGTGCTGCG TTCCGAATAC GTGCTGGCCG TGCGCGGCAC TGTGCGTCCA 
CGCCCTGAAG GCATGGTGAA CCCCAATATG AAGACGGGTG AAGTGGAAGT GTATGTTTCC 
GAGTGGAAAC TGCTGAACAC CTCCAAGACT CCTCCGTTTC AGGTGGAAGA CCGCGTTGAG 
GCCAGCGAAA ACCTGCGCCT TGAATACCGC TATCTCGACC TGCGCCGTCC TCGGCTTGCC 
CGCAACTTCC AGCTGCGCCA CCGTGCCACG CAGGCTATCC GCAATTATCT TGACCAGCTG 
AACTTTCTGG AAGTGGAAAC CCCGTATCTC ACCAAATCCA CTCCTGAAGG TGCCCGTGAT 
TTTCTGGTGC CCAGCCGTAT GAATCAGGGA GAATTTTACG CGCTGCCGCA GTCTCCGCAG 
ATTTTCAAGC AGCTTCTGAT GGTGGCCGGT ATGGACCGCT ATTATCAGAT TGTGCGCTGT 
TTCCGCGACG AAGACCTGCG TGCCGACCGT CAGCCCGAGT TCACTCAGGT GGATATCGAG 
ATGAGCTTTG TGGACGAAGA ACGCGTGCAG TCCATGGCGG AAGGATTGAT GGCGAGGGTT 
TTCAAGGAGA CTCTGGGCAT TGATGTGGCG CTGCCTTTCC CGCGTATGCC GTATGATCAG 
GCCATTGCCG AATATGGTCT GGACAAGCCT GACACCCGCT TTGATCTGCG CCTCAAGGAT 
GTGACGGATA TCCTGCGCGG TTCCGGATTC CGGCTGTTTG CCAAGGCGGA ACTGGTCAAA 
GCCATGCGTG TGCCCGGCGG TGCCGTGCTT TCGCGCAAGG AAATTGACGA CTTCACCGAG 
TTTGTGAAGG TTTACGGTGC GCAGGGGCTT GCGTGGATAA AGATTAAGGA AGACGAATGG 
CAGTCGCCCA TTGCCAAGTT CCTTTCCGAT GACGAGCGCG CCGCACTTAC TACGGAGCTG 
GGGCTGGAAA CGGGCGATAT CGTGTTCTTT CAGGCTGCTT CGCCCGACGT GGTCAATAAC 
TCGCTGGGAT ACCTGCGTCT CAAGGTGGCC GACAGGTTCG GGCTTATTCC CGAAAACAGC 
TACAATTTCC TGTGGGTGAC TGATTTTCCC CTGTTTGAAT ACTCGCCCGA AGATAAGCGC 
TATGTGGCCT GCCACCATCC TTTCACTGCG CCTCAGGTAG GCCACGAAGA ACTGATGGTC 
AGCGATCCGG CTAAAGCCCG CGCCCGTGCA TATGACCTTG TGCTCAACGG CAACGAAGTG 
GGCGGCGGAT CCATACGCAT CCACAGTCGC GAAGCACAGG AACACATGTT CCGCGCTCTG 
GGCTTTGATC CGCAGGAAGC CGAGGAACAG TTCGGTTTTC TCATGCAGGC GCTGGAACTG 
GGCGCACCGC CTCATGGCGG CATAGCCTTC GGCATGGACC GTCTGGTTAT GCTGCTGGCG 
GGCTCCGCAT CCATCCGCGA TGTCATAGCC TTCCCGAAAA CACAGAAGGC AACCTGTCTG 
ATGACGCATG CCCCTGATCA GGTAGCGGCA AAACAGCTGC GCGAGCTTGG CATCAGACTA 
CGTGAAAAAC AGGAAGCGTA A 

 

Protein sequence

MSDQNLDIQQ DHQKYVESLG DWARTNTCGE LNANAIGSEV CLMGWVQFRR DHGGLIFIDL 
RDRSGLTQVV FSPDVSVDAH ERAHVLRSEY VLAVRGTVRP RPEGMVNPNM KTGEVEVYVS 
EWKLLNTSKT PPFQVEDRVE ASENLRLEYR YLDLRRPRLA RNFQLRHRAT QAIRNYLDQL 
NFLEVETPYL TKSTPEGARD FLVPSRMNQG EFYALPQSPQ IFKQLLMVAG MDRYYQIVRC 
FRDEDLRADR QPEFTQVDIE MSFVDEERVQ SMAEGLMARV FKETLGIDVA LPFPRMPYDQ 
AIAEYGLDKP DTRFDLRLKD VTDILRGSGF RLFAKAELVK AMRVPGGAVL SRKEIDDFTE 
FVKVYGAQGL AWIKIKEDEW QSPIAKFLSD DERAALTTEL GLETGDIVFF QAASPDVVNN 
SLGYLRLKVA DRFGLIPENS YNFLWVTDFP LFEYSPEDKR YVACHHPFTA PQVGHEELMV 
SDPAKARARA YDLVLNGNEV GGGSIRIHSR EAQEHMFRAL GFDPQEAEEQ FGFLMQALEL 
GAPPHGGIAF GMDRLVMLLA GSASIRDVIA FPKTQKATCL MTHAPDQVAA KQLRELGIRL 
REKQEA