Gene Gmet_3542 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagGmet_3542 
Symbol 
ID3739801 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGeobacter metallireducens GS-15 
KingdomBacteria 
Replicon accessionNC_007517 
Strand
Start bp3975210 
End bp3976025 
Gene Length816 bp 
Protein Length271 aa 
Translation table11 
GC content62% 
IMG OID637780831 
ProductTPR repeat-containing protein 
Protein accessionYP_386472 
Protein GI78224725 
COG category[S] Function unknown 
COG ID[COG1729] Uncharacterized protein conserved in bacteria 
TIGRFAM ID[TIGR02795] tol-pal system protein YbgF 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value1.61801e-15 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones68 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACATCG TACGGAATAT ATCGCTCGTC GTGCTGCTGG CCCTGTCGGG ATGCGCCATG 
CGCAGCGACC TGGAGACGGT GCAACGGGAC AACGAGGAAC TGAAGACCCG CATCTTCCGC
CTTGAGAAGG ACCTGGGAGG GGTGCGGACG GAGACCAGGG CCGGCATCGA GACAACCTTG
CAGGACTTCG AGAAGGAGCG GGCCGGCGCC CGTAAGGGGC TCGCGGACCT CCAAGCATCC
ATGGACGCCA TGAAGGTTGA CCTCCAGGTA ATGGCCGGGA AGGTGGACGA CCTCTCCCTG
GCCGCCAAGA AGCCGACCGA GGAGGTGAAT CTCCTCAAGG AAGACCTGGA ACGGCGCCTT
TCCTCCCTGG AGGAAAGGCT AGGAGCGGTG CAGAAGAAGG TGACGGACAT GGAAACGGCC
CAGGCCAAGC CCCCCGAGCC TGCGACTCCC GAAGCCCTTT ACCAGAAGGG GCTCGACGCC
TACCGGAGCG GCAATTTCGC TGCGGCCCGG GAGTCATTTG CCCGCTTCCT GGAACAGCAC
CCGAAGCACG AACTTGCGGT CAACGCCCAC TACTGGTCCG GCGAGGCCTA CTACGGCGAA
AAGAAATACG AACAGGCAAT CCTGGAATTC CAGGAGGTGA TCAAAAATTT CCCCGGCAAG
GAAAAGGTAC CTGCGGCCAT GCTGAAACAG GCCGGGGCCT TCAACGAGAT CGGCGACGTG
AAGAGCGCCC GTTACGTGCT GCGGAAACTC ATCGACGAGC ACCCCTCCAC CGAGGAGGCG
AGGCGGGCCA AGGAGAGGCT CAAGGCCCTC AAATAA
 
Protein sequence
MNIVRNISLV VLLALSGCAM RSDLETVQRD NEELKTRIFR LEKDLGGVRT ETRAGIETTL 
QDFEKERAGA RKGLADLQAS MDAMKVDLQV MAGKVDDLSL AAKKPTEEVN LLKEDLERRL
SSLEERLGAV QKKVTDMETA QAKPPEPATP EALYQKGLDA YRSGNFAAAR ESFARFLEQH
PKHELAVNAH YWSGEAYYGE KKYEQAILEF QEVIKNFPGK EKVPAAMLKQ AGAFNEIGDV
KSARYVLRKL IDEHPSTEEA RRAKERLKAL K