| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gmet_3512 |
|---|
| Symbol | |
|---|
| ID | 3739053 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter metallireducens GS-15 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007517 |
|---|
| Strand | + |
|---|
| Start bp | 3943821 |
|---|
| End bp | 3946832 |
|---|
| Gene Length | 3012 bp |
|---|
| Protein Length | 1003 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637780798 |
|---|
| Product | L-proline dehydrogenase / delta-1-pyrroline-5-carboxylate dehydrogenase |
|---|
| Protein accession | YP_386442 |
|---|
| Protein GI | 78224695 |
|---|
| COG category | [C] Energy production and conversion
[E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0506] Proline dehydrogenase
[COG1012] NAD-dependent aldehyde dehydrogenases |
|---|
| TIGRFAM ID | [TIGR01237] delta-1-pyrroline-5-carboxylate dehydrogenase, group 2, putative |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 58 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCACAGCA GCGAACTGAA CGCCAGAATC GTCAGCCGCG GCAAGGAATT TTTCACCAGC
ATCGCCGGCG AGAAGCCGTC CCTCTTCGAC AAGGGGGCCT GGATGGGAAA GGCCATGGAC
TGGAGCATGC GGAACGACCA GTTCAAGGTC CAGCTGTTCC GGTTCGTGGA CGTGTTCCCC
TCCCTCACCA CCAGCAGGCT CCTGACGGAG CACATCCGCG AGTACTTCGG GGATGAGGAG
GCAATGCCCC CGTTCATGGC CACTGGGGCC AAGGTGGCGG GGATGCTCGG CTCCTTCGGC
GGCGCCGTGC TGAACCGGGT GCTCACCTCC AATGTCGAGG ATATGGCCCG CCAGTTCATC
GTGGGTGAAA CCACGAAGGA GGCGGTGAAG AACCTGGAAA AACTCCGGAA AGACGGCTTC
GCCGCCGTGG TGGATGTCCT CGGCGAGGCG ACTCTTTCGG AGGAGGAGGC CGAGGCCTAC
ACGAACACGT ACCTGGAGCT TCTGGAGACG CTGAAGAAGG AGCAGGGAAC CTGGAAGGGA
CTACCGGGCA CGGGGGGCGA TCCGGATCTC GACTGGGGCC ACGCCCCCAG GGTGAATATC
GCGGTAAAGC CCACGGCCCT CTACTGTCTC GCCAATCCCC AGGATTTCGA GGGGTCGGTG
GTCGCCATCC TGAACCGGAT GCGCCGCATC TTCCGGAAGG TCATGGCGCT AAACGGCTTC
CTCTGTATCG ACATGGAATC GTACCGCTTC AAGGACATGA CTCTGGAGGT CTTTCGCCGC
CTCAGGCTGG AGCATCCGGG CTATCCCCAC CTGGGGATCG CGCTCCAGGC CTACCAGAAG
GATACGGACC GGGACCTGGA CGGCCTCCTG GCCTGGGCGA AGGAGCAGGG GGTCCCGATC
TCCATCCGCC TCGTGAAGGG GGCCTACTGG GACTACGAGA CCGTCCGGGC CCGGCAGAAC
GGCTGGGAGG TGCCGGTATG GACCATCAAG GCCGAAACCG ATGCCGCCTT CGAGCGCCAG
TCCCGAAAGA TTCTGGAAAA CCACGCCGTC TGCCACTTCG CCTGCGGCTC CCACAACATC
CGCACCATTT CGGCGGTCAT GGAGCTGGCG CGGGAACTGA ACGTCCCCCC TGACCGCTAC
GAGTTCCAGG TCCTCTACGG CATGGCCGAG CCGGTCCGCA AGGGGATCCT CAGGGTTGCG
GGGCGCATCC GCCTCTACTG TCCCTACGGG AGCATGGTGC CGGGGATGGG GTACCTGGTG
CGCCGGCTCC TGGAGAACAC CGCCAACGAA TCGTTTCTGC GCAAGAGCTT TGCCGAGGAG
GCCCGGATCG AACAGCTCCT GGAAGACCCG GCCGTGGCGG CGGAGCGGGA GCGGGAAGCC
CGGGCCGCCA GGCCGGAAAA GGAGCGGACG GGCCCCGACG GTCTCCCCCC CTTCGGGAAC
GAGCCGATGG TGGATTTCAC CCGGCCCGAC CACCGCGCCG CCTTTCCGGA TGCGTTGGCC
CGGGTGCGGA CTCAACGTGG AAAAACCTAT CCCCTCTTCA TCAACGGTAA AGAGGTCCTG
ACCGCCGAAC TCATGCCGAC CGTGAACCCC AACAACCCCT CCGAGGTCCT GGGGCAGATC
TGCCAGGCCG GGACAAAGGA GGCGGGGGAT GCCGTCGCCG CAGCCAAGGC CGCCTTTCCG
GCGTGGCGCG ACACCGATCC CCGGACCCGC GCCGACTATC TCCTCAAGGC AGCTCTGATA
GCCCGCACGC GGATTTTCGA CCTCTCCGCC TGGCAGATCC TCGAAATCGG CAAGCAGTGG
GACCAGGCCT ATGCCGACGT GACCGAGGCC ATTGATTTTC TGGAATACTA CGCCCGGGAG
ATGATGCGGT TGGGAGAGCC CCAACGGCTC GGCCACGCAC CGGGGGAGCT GAACCATTAC
TGCTACGAGC CCCGGGGAGT GGCCGCGGTC ATCGCCCCCT GGAACTTCCC CCTGGCCATC
AGCACGGGGA TGGCTGCGGC GGCAATCGTC ACCGGCAACT GCGTGGTCTA CAAGCCGTCG
GGCCTCACCC CCATCGTCGG CTGGCACCTG GCGGAGCTCT TCCGGGAGGC GAGGCTCCCC
GACGGGGTCT TCAACTACGT GCCGGGGCGG AGCTCGGTCA TGGGAGACTA CTTGGTGGAC
CACCCGGACG TGAGCCTCAT CGCCTTCACC GGCTCCCTGG AGACGGGCTT GAGGATCAAC
GAGCGGGCCG CCAGGGTCCA GCCTGGTCAG GCCAACGTGA AACGGGTCAT CTGCGAGATG
GGGGGGAAGA ACGCCATCAT CATCGACGAC GACGCGGACC TGGACGAGGC GGTCCCCCAG
GTGCTCTCAT CGGCCTTCGG GTTCCAGGGG CAGAAGTGCT CGGCCTGCTC CCGGGTCATC
GTGCTGGACG CCATCCATGA CCGGTTCGTG GCGCGGCTCG TGGCCATGGC CCGGGCCATC
TCGGTGGGTC CGCCGGAGGA CCCGGCCCAC TCCATGGGGG CCGTGGCCGA CGACAACGCC
ATGAAGAGGA TCAGGGAGTA CATTGAAATC GGGAAAACGG AGGGGCAGCT CCTCCACGAA
GGGCCGGTGC CGGCCGGCAC CGGGTACTAC GTCCCCATGA CCATCATCGG CGGCATCCGG
CCCGAGCACT GCATCGCCCG GGAGGAGATC TTCGGCCCGG TGCTGGCGGT CATGCGGGCC
AAGGACTTCG ATGAGGCCAT CCAATGGGCA AACGCCCCCC GGTTTGCCCT CACGGGAGGG
GTCTTCAGCC GCAGCCCCGA GCACCTGGCA AAGGCGAGGC GGGAGTTTCG GGTGGGAAAC
CTCTACCTCA ACCGCGGCAT CACCGGCGCC CTCGTGGAGC GGCAACCCTT TGGCGGCTCC
CGCATGTCGG GGGGAGGGAC CAAGGCGGGG GGACCTGACT ACCTCCTCCA CTTCATGGAC
CCGCGAACGG TGACCGAGAA CACCATGCGG CGCGGCTTCG CGCCGAGCGA CGAGGAGAGC
GGCCGCCTTT AA
|
|---|
| Protein sequence | MHSSELNARI VSRGKEFFTS IAGEKPSLFD KGAWMGKAMD WSMRNDQFKV QLFRFVDVFP
SLTTSRLLTE HIREYFGDEE AMPPFMATGA KVAGMLGSFG GAVLNRVLTS NVEDMARQFI
VGETTKEAVK NLEKLRKDGF AAVVDVLGEA TLSEEEAEAY TNTYLELLET LKKEQGTWKG
LPGTGGDPDL DWGHAPRVNI AVKPTALYCL ANPQDFEGSV VAILNRMRRI FRKVMALNGF
LCIDMESYRF KDMTLEVFRR LRLEHPGYPH LGIALQAYQK DTDRDLDGLL AWAKEQGVPI
SIRLVKGAYW DYETVRARQN GWEVPVWTIK AETDAAFERQ SRKILENHAV CHFACGSHNI
RTISAVMELA RELNVPPDRY EFQVLYGMAE PVRKGILRVA GRIRLYCPYG SMVPGMGYLV
RRLLENTANE SFLRKSFAEE ARIEQLLEDP AVAAEREREA RAARPEKERT GPDGLPPFGN
EPMVDFTRPD HRAAFPDALA RVRTQRGKTY PLFINGKEVL TAELMPTVNP NNPSEVLGQI
CQAGTKEAGD AVAAAKAAFP AWRDTDPRTR ADYLLKAALI ARTRIFDLSA WQILEIGKQW
DQAYADVTEA IDFLEYYARE MMRLGEPQRL GHAPGELNHY CYEPRGVAAV IAPWNFPLAI
STGMAAAAIV TGNCVVYKPS GLTPIVGWHL AELFREARLP DGVFNYVPGR SSVMGDYLVD
HPDVSLIAFT GSLETGLRIN ERAARVQPGQ ANVKRVICEM GGKNAIIIDD DADLDEAVPQ
VLSSAFGFQG QKCSACSRVI VLDAIHDRFV ARLVAMARAI SVGPPEDPAH SMGAVADDNA
MKRIREYIEI GKTEGQLLHE GPVPAGTGYY VPMTIIGGIR PEHCIAREEI FGPVLAVMRA
KDFDEAIQWA NAPRFALTGG VFSRSPEHLA KARREFRVGN LYLNRGITGA LVERQPFGGS
RMSGGGTKAG GPDYLLHFMD PRTVTENTMR RGFAPSDEES GRL
|
|---|
| |