Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Gmet_2838 |
Symbol | |
ID | 3741144 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Geobacter metallireducens GS-15 |
Kingdom | Bacteria |
Replicon accession | NC_007517 |
Strand | + |
Start bp | 3217388 |
End bp | 3218278 |
Gene Length | 891 bp |
Protein Length | 296 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 637780123 |
Product | pseudouridine synthase, RluD |
Protein accession | YP_385781 |
Protein GI | 78224034 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.0000000000000325771 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 1 |
Fosmid unclonability p-value | 1.22587e-21 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGCTCACGT TCACCATTAC AGAATCCGAT CACTGCCGCG GGGTGGAAAG CTTCCTCAGG AACCTCCTCC CGGGCGCTCC CCTCGCCTAC CTCGGCAAGC TCACCCGTGG TGGGCACCTG ACCGTTAACG GCCTCCCGGT CACACCCGAC ACCCTCCTCG TGACAGGTGA CACCATGGCT CTCAAGGAAA GCGGCCGGAC AAGGGAACTC CTGGCCGCCA AACGTCCCTC CCTCGATATC CTCTTCGAGG ACGACCGGAT TGTCGTCGTC AACAAGCCCC CCGGGCTGCC GGTGCACCGG ACCGCCGAAG ACGAGCAAAC CCTCGTGGAT GTGGCGGAAC GGTTCCTGGC GCAGCGGGGC ACCCCTGCGA AGCTCCGCCC CGTGAACCGC CTCGACCGCG GCACCTCCGG CGCCACGATA CTCGCCAAGA GCGCCACGAG TGCCGGCATG TTTGGCCGCT TCGTCAAGGA AACCGGCCTT GGCAAGCTCT ACCTGGCTGT TGCAGACGGC AAACTGCCAG CCGAAGGGAC CATCGATACC CCCCTGGAAG GCAAGGAGGC GCAGACCCAG TACCGCACAC TGTTCCAAGG AAAGAGTGCT GCCCTGCTCC TCGTCACCCC CATAACCGGC CGTACGCACC AAATTCGCAA ACACCTCGCC CTCACCGGCC ACCCAGTGCG AGGCGACCGC CGCTACCGGG GCGCTCCCCT GGCGGCCTAT CCAGGGCACT GCCTCCACGC CTTTCTTGTT TCCTTCCGTC ACCCCGTTTC CGGCGAAGAG ATCGTCATTC ATGCCCCTCT TCCCGCGGCG TTGCTAGAAG AGGTGCGCCT GTTGTCCGGC GACTTCTATT CCCGCATACT CCTCTCGCTG CCGTCACTGC CGGTGACATA A
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Protein sequence | MLTFTITESD HCRGVESFLR NLLPGAPLAY LGKLTRGGHL TVNGLPVTPD TLLVTGDTMA LKESGRTREL LAAKRPSLDI LFEDDRIVVV NKPPGLPVHR TAEDEQTLVD VAERFLAQRG TPAKLRPVNR LDRGTSGATI LAKSATSAGM FGRFVKETGL GKLYLAVADG KLPAEGTIDT PLEGKEAQTQ YRTLFQGKSA ALLLVTPITG RTHQIRKHLA LTGHPVRGDR RYRGAPLAAY PGHCLHAFLV SFRHPVSGEE IVIHAPLPAA LLEEVRLLSG DFYSRILLSL PSLPVT
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