| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gmet_2561 |
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| Symbol | |
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| ID | 3738865 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Geobacter metallireducens GS-15 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007517 |
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| Strand | + |
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| Start bp | 2907726 |
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| End bp | 2908700 |
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| Gene Length | 975 bp |
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| Protein Length | 324 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 637779847 |
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| Product | dihydrouridine synthase TIM-barrel protein nifR3 |
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| Protein accession | YP_385505 |
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| Protein GI | 78223758 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0042] tRNA-dihydrouridine synthase |
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| TIGRFAM ID | [TIGR00737] putative TIM-barrel protein, nifR3 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 46 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 0.000534823 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCTCAACC CCCTGGCCAT CGGCCCCCTG ACCCTGGCAA ACAATCTGAT CCTCGCCCCC
ATGGCGGGAA TTACGAACCT CCCCTTCCGG CTTCTGGCCC GGGAGGAGGG GGCGAGCCTC
TGCTTTACCG AGATGGTGAG CGTGAACGGC CTCGTGCGGG AGGGGCGCAA GACCTTCGAG
CTTCTGCGAA GCGTGCCGGA GGACCGTCCC CTGGGGATCC AGCTCTTCGG CGACGACCCG
CAGCTTCTGG CCGAAGGGGC ACGGATGGTG GAGGGGCACG GCGACCTCAT CGACATCAAC
ATGGGATGCC CGGTCAAGAA GGTGGTCGGC ACCGGGGCCG GCAGCGCCCT GTTGCGGGAG
CCGGCAAAGG TCCGGGCCAT CATCCGTGAG ACCCGCCGCG CCACACGCCT TCCCCTGACC
GTCAAGATCC GCAGCGGCTG GGCCTGCGGC GAGGCCAACT TCCTTGATAT CGCCCAGATT
GCCGAGGAGG AGGGGTGCGA CGCCATCACC CTCCACCCCC GGAGCCGGTC CCAGATGTTC
GAGGGGCACG CCGACTGGCA GCAGATCGCC GAGATGAAGC AGAGCGTGAA AATCCCCGTC
ATCGGCAGCG GCGATCTCTT CACCGCCGCC GACGTCACCG CCATGCTGGC CGAAACCGGC
TGCGACGGAG TCATGGTGGC CCGGGGCGCC CTGGGTAACC CGTGGATCTT CCGCCAGGCC
CTGGCCCTCC TGGACGGCAG GGAACCGGAC GCACCCTCCA CCGGGGAGCG GCTCCGCGCC
GCGCTCCGAC ACCTGGAGCT CTTCACGGAG CTCGCCGGCG AGCGGGTGGC CCTGCGGGAG
ATGCGCAAGC ACTTCAGCTG GTATTCCCAC GGTCTCTCCG GCGCGGCCCA GTTCCGCAAG
GCCGTCAACA TCATCGAGGG AAAGGAAGCC CTTCTCGAAG CGCTGCACCG CTTCTTCGCG
CCGGAGGCGC CATGA
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| Protein sequence | MLNPLAIGPL TLANNLILAP MAGITNLPFR LLAREEGASL CFTEMVSVNG LVREGRKTFE
LLRSVPEDRP LGIQLFGDDP QLLAEGARMV EGHGDLIDIN MGCPVKKVVG TGAGSALLRE
PAKVRAIIRE TRRATRLPLT VKIRSGWACG EANFLDIAQI AEEEGCDAIT LHPRSRSQMF
EGHADWQQIA EMKQSVKIPV IGSGDLFTAA DVTAMLAETG CDGVMVARGA LGNPWIFRQA
LALLDGREPD APSTGERLRA ALRHLELFTE LAGERVALRE MRKHFSWYSH GLSGAAQFRK
AVNIIEGKEA LLEALHRFFA PEAP
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