| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gmet_2446 |
|---|
| Symbol | |
|---|
| ID | 3740330 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter metallireducens GS-15 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007517 |
|---|
| Strand | - |
|---|
| Start bp | 2770019 |
|---|
| End bp | 2771572 |
|---|
| Gene Length | 1554 bp |
|---|
| Protein Length | 517 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637779738 |
|---|
| Product | twin-arginine translocation pathway signal |
|---|
| Protein accession | YP_385396 |
|---|
| Protein GI | 78223649 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG3670] Lignostilbene-alpha,beta-dioxygenase and related enzymes |
|---|
| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.000000341259 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 49 |
|---|
| Fosmid unclonability p-value | 0.858746 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACATTA ACCGTCGTGA TTTTCTGAAA CTAGCCGGTG CAGGGGGGCT TGCCCTCGCC
CTGCCCGGCT GCGCGGGGAA TCTGCCTCTA CCAAAGGAGG TCTTTCCCGA CTTTGGCGAC
TCTGGGCGCC CCTGGCTCGG CCTTGCCACG TCGCTTCGCG AGGAGCACGA CTACGAGGCG
CGCATCGAGG GGACGATTCC CTCCGCCCTC AGGGGGACTC TCTACCGCAA CGGCCCGGCG
CTTTTCGACC GAGGCGGGCT GCGCAAGCGG ACTTTGCTGG ACGGGGATGG AATGGTGCAG
TCCTTCACAG TCGGCGACGG CGGGGTCCGC TACCGCAACC GCTACGTCCG GACGGAGAAA
TTCGTGGCCG AAGAGGCCGC CGGCCGTTTT CTGTATCCCA CGTGGAGCAC CCAGAAGCCG
GGAGGTTTCT GGGGCAATTT CTGGCAGGCG GGGTCGGTTC CGAACCAGGC GGGCATAACA
GTTTTCTGGT GGCGCGGAAA ACTCTACGCC TTCGACGAGG GGAACATTCC GTACGAGCTC
GACCCGGAGT CCCTGGCCAC CGCCGGTCCT TCGAATCTGG GGCTGACCCC CGGCACTGCC
TTCTATTCGG CCCATCCCAA GCTTGATCCC CACACCGGGG AATGGCTCCA CTTCGGGGTG
AAGTACGGCC CGAGGCCGCT CCTCCATCTC TCTGCCTTCG CGGCCGACGG AAGTCTGAAG
CGACACCGGA CGTTTCCTCT CCCCCGCTAT GTGTACATGC ATGACTGGAT CGTTTCCGGC
CGGTACCTTA TCCTCTCCCT TCACCCTGTC GAAATCGAAT TCTGGGGATT TCTCCTGGGA
TTTCGAAGCC TTTTTGCCTC GCTTCGCTGG CGGCCGGAAT GGGGGAACCT GCTGATGATC
GTCGAACGGG AAGGGGAGGG GAAGCCGCGC CTGGTGGAGA CCGAGGCGTG TTACATGTGG
CATTCCTTCA ACGCCTATGA GGAGGGAGGC GAAACCGTTG CCGACTTCAT CGGCTACCGC
AATCCGGACC ACTTCGTGGG AGATGATCCG GTCATCTCCG CCGTCATGGA AGGGCGTAGG
GGACACTACG ATTTTCCCGG AGAGATCATG CGGTACCGGA TCGACCCCGT CCGTTGCACG
GTTCGTCGGG AGACCCTGAA CCCGGGGAGC TGCGAGTGGC CACGCATCGA CGAACGCCTC
CGCTGCCGTC GCCATCGCAT CGGCTACGCG GTGAAGTGCC TTCCCGGCGA GTTCTTCTGG
TCCATTGTCA TGCGCGTCGA TTTCCTGAGC GGAACCACCG CCGAATATTC TTTCGGACGG
GGGAAATACT GCACCGAAGC GGTCTTCGTG CCCAAACCGG GAACATCTGC GGACGCAAGC
CAATCGGCCG GAGAGGGGTG GCTCCTGACG GAGGTCTACG ACAGCCATAC CCGAAAAAGC
TTTCTTGCCA TCTTGGACGC GGGAAGGGTT GCCGACGGCC CCCTTGCCAT TGCCCATCTT
ACCCATCACG TTCCTTTCAG CTACCATGGT TGGTGGCATC CTTCACCCGT TTAA
|
|---|
| Protein sequence | MNINRRDFLK LAGAGGLALA LPGCAGNLPL PKEVFPDFGD SGRPWLGLAT SLREEHDYEA
RIEGTIPSAL RGTLYRNGPA LFDRGGLRKR TLLDGDGMVQ SFTVGDGGVR YRNRYVRTEK
FVAEEAAGRF LYPTWSTQKP GGFWGNFWQA GSVPNQAGIT VFWWRGKLYA FDEGNIPYEL
DPESLATAGP SNLGLTPGTA FYSAHPKLDP HTGEWLHFGV KYGPRPLLHL SAFAADGSLK
RHRTFPLPRY VYMHDWIVSG RYLILSLHPV EIEFWGFLLG FRSLFASLRW RPEWGNLLMI
VEREGEGKPR LVETEACYMW HSFNAYEEGG ETVADFIGYR NPDHFVGDDP VISAVMEGRR
GHYDFPGEIM RYRIDPVRCT VRRETLNPGS CEWPRIDERL RCRRHRIGYA VKCLPGEFFW
SIVMRVDFLS GTTAEYSFGR GKYCTEAVFV PKPGTSADAS QSAGEGWLLT EVYDSHTRKS
FLAILDAGRV ADGPLAIAHL THHVPFSYHG WWHPSPV
|
|---|
| |