Gene Gmet_1953 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagGmet_1953 
Symbol 
ID3740133 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGeobacter metallireducens GS-15 
KingdomBacteria 
Replicon accessionNC_007517 
Strand
Start bp2179681 
End bp2180292 
Gene Length612 bp 
Protein Length203 aa 
Translation table11 
GC content56% 
IMG OID637779247 
Productlytic transglycosylase, catalytic 
Protein accessionYP_384907 
Protein GI78223160 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value5.18233e-15 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones61 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCGAAAG TTGCCAGTAT TCTGGCTCTT GCCCTCTTGC TCCTGGGGGG AGTGGGGTAC 
TTTGACGCCA ACGCAGACAT TTACCGGTAC GAAGATGAAG AGGGGGTCGT TCATTTTACC
GACGCCCCCA CCGATAAACG GTTCAAGATT TTCATGAGGG ATATCAAGCG GGACCGGAAG
CTTCGCACCA CGTTTAAGCT TGCACGCTTT ACCCGTGACC CTGCCGAATT CGAGCCGATC
ATCACCCAGT GCGCCCAGGA ATTCGGCGTT GACAGATCGC TGGTGAAGGC TGTAATCCAT
GCCGAATCGG GATACAACCC CAATGCCGTC TCCCCCAAGG GGGCAAGTGG GCTCATGCAG
CTCATGCCCA AGACGGCCCG GGATCTGAAA GTGGCTAACA GCCTCGACCC GCGGGAGAAC
ATTCGCGGTG GTGTCCGCTA CCTTCGCTTC CTGCTCGATA CGTTCCGGGG TGATGAGAGC
TTGGCCCTGG CAGCCTATAA TGCCGGACTT TCACGGGTAG CCCAGTATAA CGGCATTCCC
CCTTATCAGG AAACGCGCAC CTATGTCGAC AGGGTGCTTA CTTACAGAAA ATCCTACCAG
ACCACCAATT GA
 
Protein sequence
MPKVASILAL ALLLLGGVGY FDANADIYRY EDEEGVVHFT DAPTDKRFKI FMRDIKRDRK 
LRTTFKLARF TRDPAEFEPI ITQCAQEFGV DRSLVKAVIH AESGYNPNAV SPKGASGLMQ
LMPKTARDLK VANSLDPREN IRGGVRYLRF LLDTFRGDES LALAAYNAGL SRVAQYNGIP
PYQETRTYVD RVLTYRKSYQ TTN