| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gmet_1934 |
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| Symbol | |
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| ID | 3738118 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Geobacter metallireducens GS-15 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007517 |
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| Strand | - |
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| Start bp | 2158962 |
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| End bp | 2160839 |
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| Gene Length | 1878 bp |
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| Protein Length | 625 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637779226 |
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| Product | 1-deoxy-D-xylulose-5-phosphate synthase |
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| Protein accession | YP_384888 |
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| Protein GI | 78223141 |
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| COG category | [H] Coenzyme transport and metabolism
[I] Lipid transport and metabolism |
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| COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
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| TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 63 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACAGCAA TTCTCGACAC CATCGAATCC CCCTGCGACC TGAAGGGGGT CACCCAGCGG
GAGCTTGCAC AGCTTGCCGC GGAGTTGCGG GAGAAAATCA TTACCGTCTG CGCCAGGAAC
GGCGGACACC TGGCTCCAAG CCTCGGGGTG GTCGAGTTGA CCCTGGCGCT CCATAGAGTC
TTCGATTCTC CGGCCGACAA GATCATCTGG GACGTGGGGC ACCAGGCCTA TGCCCACAAG
CTGCTCACGG GCCGGCGCGA CCGGTTCGCC ACGCTCCGCA CCCTTGGCGG AATCAGCGGG
TTTCCCAAAC GGTGCGAGTC CTCCCATGAT GCCTTCGACA CAGGGCACAC CTCTACCTCC
ATCTCTGCTG CCCTGGGTTT TGCCGTTGCC CGGGACCTGC GGGGGGAGCG GAACAAGGTG
GTGGCCGTCA TCGGCGACGG CTCCATGACC GGCGGCCTCG CCTACGAAGG GCTCAATAAC
GCCGGGCACC TGAACAAGGA TCTGGTCGTG GTCCTGAACG ACAACGAGAT GTCCATTGCC
GAGAACGTGG GAGCCCTGTC GAATTTCTTG AACCGGACCG TCACCAGCGA ATTCGTCCAT
ACCATGAAGA AGGACCTGGA AGGGTTCCTC GGCGGACTCG ACCGCATCGG CCACGGGGTT
CTGAAGGTGG CCAAGCGGGC AGAGGAGTCC CTCAAGGGGC TCTTCACCCC CGGCATGCTC
TTCGAGGCCT TCGGGTTCGA GTACATCGGC CCCATCGACG GCCACGACAC GGCCCGACTC
ATGGAGACCT TCGAGAAGGT GAAGCGCTTT GACGACGCGG TCCTGATCCA TGTCCTGACC
AAGAAAGGGA GGGGGTATCC TCCCGCCGAA GAAAAACCGG CGCTCTTCCA CGGCGTTGGC
CCCTTTGAGC TGGAAACCGG CAAGGTCATC AAGGGGAAGG GGGGCGCAGC CTCTTACACC
GGCGTCTTTG GCGAGGCCAT CAGAAAAATC GCCGCCGAGG ACGAGCGGGT CATCGCCCTG
ACTGCGGCCA TGCCCGACGG CACCGGGCTT ACCCCCTTTG CCGCCGACTA TCCCACGCGG
TTCTTCGACG TGGGTATAGC CGAACAGCAT GGGGTCACCT TTGCCGCAGG GCTCGCCGCC
GAAGGATACC GGCCGGTCTT TGCCGTCTAT TCGTCGTTCC TGCAGCGGGC CTACGACCAG
GTCTTCCACG ACGTCTGCCT CCAGAATCTT CCGGTTACCT TCGCCATTGA CCGTGCCGGG
GTGGTGGGGA GCGACGGTCC GACCCACCAT GGACTTTTCG ATCTTGCGTA CCTGCGCCAT
CTCCCCAATA TGGTGGTCAT GGCACCCAAG GACGAAAACG AGCTTCAGCA CCTGCTCTTG
ACCGCCATCG AGCACGACGG ACCGGCGGCC GTCCGCTATC CCCGGGGTAA CGGTTACGGG
GTTTCCCTGG ACCAGACCTG CAGCGTCCTT CCCATTGGGA AGGGAGAGAT CCTGAGGGAA
GGTCTGGACG GTGCCCTCCT TGCCATCGGT TCCACCGTCT ACCCGGCCCG TGAGGCAGCT
GAAGCCTTGG CCGCCGAAGG AATCGACCTC GCCGTCGTGA ATGCCCGCTT CGTGAAACCC
CTCGACCGGG ACCTGATCCT CAGCTTGGCC CGAACCACCG GCAGGCTCAT CATCGTTGAG
GAGAACGTCA TCCAGGGAGG CTTCGGCACG GCGGTGCTGG AACTTCTCGA AGAGGAAGGA
ATCAATGGGG TCAAGGTTCT CCGCCTGGGA TACCCGGACC GGTACGTGGA GCAGGGGGAG
CAGCATGAAC TGAGGGCCCA GTATGGCCTC GACGCCCCGG GAATAACGGC TCGGGTCAGA
ACATTCATGA AGGGATAA
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| Protein sequence | MTAILDTIES PCDLKGVTQR ELAQLAAELR EKIITVCARN GGHLAPSLGV VELTLALHRV
FDSPADKIIW DVGHQAYAHK LLTGRRDRFA TLRTLGGISG FPKRCESSHD AFDTGHTSTS
ISAALGFAVA RDLRGERNKV VAVIGDGSMT GGLAYEGLNN AGHLNKDLVV VLNDNEMSIA
ENVGALSNFL NRTVTSEFVH TMKKDLEGFL GGLDRIGHGV LKVAKRAEES LKGLFTPGML
FEAFGFEYIG PIDGHDTARL METFEKVKRF DDAVLIHVLT KKGRGYPPAE EKPALFHGVG
PFELETGKVI KGKGGAASYT GVFGEAIRKI AAEDERVIAL TAAMPDGTGL TPFAADYPTR
FFDVGIAEQH GVTFAAGLAA EGYRPVFAVY SSFLQRAYDQ VFHDVCLQNL PVTFAIDRAG
VVGSDGPTHH GLFDLAYLRH LPNMVVMAPK DENELQHLLL TAIEHDGPAA VRYPRGNGYG
VSLDQTCSVL PIGKGEILRE GLDGALLAIG STVYPAREAA EALAAEGIDL AVVNARFVKP
LDRDLILSLA RTTGRLIIVE ENVIQGGFGT AVLELLEEEG INGVKVLRLG YPDRYVEQGE
QHELRAQYGL DAPGITARVR TFMKG
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