| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gmet_1475 |
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| Symbol | |
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| ID | 3740192 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Geobacter metallireducens GS-15 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007517 |
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| Strand | + |
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| Start bp | 1658153 |
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| End bp | 1665037 |
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| Gene Length | 6885 bp |
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| Protein Length | 2294 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 637778761 |
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| Product | YD repeat-containing protein |
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| Protein accession | YP_384434 |
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| Protein GI | 78222687 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3209] Rhs family protein |
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| TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 42 |
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| Fosmid unclonability p-value | 0.705972 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGGGGAA CCAGGTATCT CATTGTGGGA ATACTGCTCA TGGCGGTATT GAGCCTCTGC
CGGGCGTCAT TCGCCGACAC GGTGACGTAC GGCTATGACG ATTTCGGACG CCTTACCGCT
ATGACCACTG TCGATGCGAC GAGGCTCACC AGGATCAGCT ACCTCTACGA CAACGTCGGC
AATTTCACGA ACCAGACCGT AACTGTGGGG ATTCTCGTGA ACATGCCGGA CGCCAACCTC
AGGAATGCCG TGTGCAGCGC GCTGGGGAAG AATCCTTCCG ATCCGCTGAC CAGGGATGAC
CTGGCACTCC TCACCACCTT AAGCGCCGCG GGAAAGGGGA TAAGCGACCT GACCGGCCTG
GAGTGGGCGG TTAACCTGAC CAGCGCCGAC CTGCGCAACA ACAACATCAC CTCAACCGCG
CCGCTGGCCG GATTGACCAA GCTGACCGTC CTGCAACTGG ACGGCAACCC CGTTGCCACG
ACAGCGGCAG TGCCCGCCAT GGGCACCGTC GGCCTCGTGC TGGCAACCCT CCTGCTGATG
CTTCTCACCA TGAGCCAGCG ATTCAGGCTC CCCGGGCGCT TCATCGCCCT GCTCGGGCTC
TGTTTCAGCC TGTCGGTCAC CACCGTCAAC GCCGCCGACG GCCCCGCCGG TCCGGGGTGG
CTGGAAGTCC AGGGCACACC GGTGACTCCC CAGGAGGCGG ACGCATTCTA CCAAGCAAAG
GGCGTCATCC AGCCCCTCTC CGCACCGCTC GGTTCCATTA CGCCGCAATC GGCCACCACC
GCCACCCCCG AGATAGCCGC CCTTGCCCGT TCCCTCAAGA ATGACCCGAG ACTCATCTAC
GAATACGTCC GCAACAACGT CGACTATGCT CCCTACTTCG GCTCCCTGAA AGGGGCCACA
CTCACCGCCA TAGAGGGTTC CGGCAACGAC TTCGACCAGG CCTCCCTCAT GATCTCGCTG
CTGCGCGCCA GCGGCTACAC CGCCCAGTAC GTCTACGGCA CCATGACCAT TCCCGTCGGC
GGCGACCCCA ACCAGAAGGA TATGCAGCAC TGGCTGGGAG TGGATGCCAC CAGCAGCGTC
ATCGGCACCG TCCTGGCGAA CGGCGGCATC CCCTACAGCC AGTCGGGAAC CTCCTTCACC
GTAAACCGCG TCTGGGCCCA GGCCACCATC GCCGGCGCCA CCTACCTCTT CGACCCGGCC
TTCAAGCCCC ATCAGACCAT CACCGGCATT GACCTGAAGA CCGCCATGGG GTACAGCACC
AGCGGCCTTC TTGCGGCGGC CGGCGGCACC GTGGGGACCG ATTACGTCCA GAGTCTGAAC
GAAGCCGGTC TCAAGAGTGC CCTGGACGGC TACACCCTGA ACCTGGCCGC CTACATCCGG
GCCAACTACC CCAACGCCAA AACGTCCGAA ATCATCGGCG GCAGTGCCAT CGTCCCCCAG
ACCCTTGCCG CGTTCCCGAC CAGCCTCGAC TTCGCCACCA CGGTCACCGC CACTTGGACC
GACATCCCTG ACGCCTACGT CCACAAGGTG AGAATCCAGC ACGGCAAGAT CGACCAGACC
TTGAACATCC CCGACCTCGC CGGCCAGAAG CTCTCCATCG TCTACCGCAC CGGTTCCATA
ACCACGGCTT CGGCAGTGGC GGCGCCCGCA ACGACTGAGC CGCAGGTGAA CCTCGCGCCG
CTTCCTACCG CCACCACCCC CGTCGACGGT CAGTTGACCA TCACCCCGGC GGGTCCGACC
GACACAACCC TGCCGAACAT CATCGTGCCG GGCTCATACC TGGACGGGAG CAAGACAATC
GTCCCCATGG CCACGGGGTC GGCAAATTTC GGCTCCATCT ATCCCGCCTC GGCAGGGGCA
AGCTCCACCT CGATGACGTG GGGGCCCATC ACCAACCCCA ATTCCGTGAC CGTCCAGATA
GTCGTCACGC TCACGAGTAA CCCGCAAGGG GCATATTCCA TTACCCAGTA CGCCGGGACA
AACAATGTCG CCCCCGGCGC AAGCATAAGC CCGAAGGTGG TCTTCTCCAA CGCCGGCCAG
ACGGCCGGCA CCAAGACCGG ACAGCTCCAC ATCCAATGGT TCTACAACGG GACACCGATT
ACCGGCGCCG ACTCTTACTA CGACCTCACC GGCTATGTCG CCAACGCCAT GTCCCTCGGG
GGCTACGGCC TGAACGCCCA GGCGTACATG AACACGCCGT ACACCGGCAA CGCCCGGCTC
AGCAACAACG GCTCCCTCCC CCTGGCCGTC ACCGCCAAGA CCCTCACCGG CACAGGCGCG
GCCCGCTTCC AGCTCGTCTC CGGCACCGCC GCCACAACCC TGGCCGCAAG CACCTTTCAG
GACATCCCGG TAACCTATCT GGCCGATGTC CACGGCACCC AAACGGCCTC CATCAACATG
GGCTTCACCT ACGACGGCAT GACATACAGC GCCACCAACT ATCTGCCCTT GCAGGGCCAG
GCCATCTACA AGCCCGACTT CACCGGCTCG CTCGGGTTCA ACGCGGGCAC CCCCTATCTC
GCCTATCCGG TGGACGGCAC CGCCCACCTT GCCAACGCCG GGAGCCAGCC CCTCACCGTG
ACCGGCTTCA GCATCACCGG CACCGATGCC GCCCGGTTCA CGATCACCGG CGGCAACGCG
GCAGGCACCA TCGCCTCCGG CGGCCACCGG GACATCACTA TCCGCTATCT GGCCAACAGC
GTCGGCACCC ATAGCGCCAC CCTGCACATC ACCTATACGT ACGACGGGAT CGCCAACTCC
ATCGACCTTA ACCTTGTCGG CCAGACCCTC TCCACACCGG TGGCCCAGCT CTGGCTTGAC
GACACGATGC TGGCCGAGGA ACTGGAACCT GTCACCGGAG TTGACCTCAG CACGATGACC
ATCTCAGTCA TGCACCAGTA TACGGGCAGC TTCGCCGACC AGTCGGTGAA CTACACCCTG
ACGCGCGGCT CCACCTACGC CATCGTCTAT GATTTCGGCG GCAGCCGCCT CGGGAAGCTC
CTGGAGAAAC GGGAGCGGCA GATGCAGGCC TACCGGGAAT CGGGGCTTGC CGACACCTCC
CGGCAGGTGC TCACCGAATC CCTCAACGTC ATCGGCCAGA CCTGGATGCG GGACACCACC
CTGGACGCCA ACCTTCTCAG CCAGATCGGC GGGGTCATCG ATCTGCGCCA GCACCGCTTC
GGCATCGTGG CCCAGGAAAC CGGCTACTAC ATCGACGTGA AGGCGCAGGT GTCCACCGTT
TCCCCCATCC ACGGCGACAC CATTGCACGG GATGCCTACT TCAGGACCAC CGGCCACCTG
GCCAGCGCCA TGGAGCACGG CGTGCTGGAA CAGATGCAGG CGAACAGCCC GGCGGTATCC
ACGGTGAAGC TTCTGCAACT GAACAACGCC GCCGGGAAAA AAGCCTTCAT GGTCACCTCC
GCCAACTACG CCGCCATCAA GCCGCAGCTT GCCAACTACA GTACAGATGA TCTGAACAGC
TTCCAGACCA GCGTCACCAG CGGCAACACC CTCATCCTCC CGGAAAACGG CAAGATCCCC
CTGCAAGTCT GGTCGGGCAA AGGGTACATC GATTTCAACA TGGGGGGCAC TTCCCGGCAC
GTGGGGATGA TCATCGGCGG GGGGTACAAC GGGGGGTACG GGGCTATCAA GGCGCCTGTG
GCGGTTAATA CAGAAATGGC CCACGTGAAT GTGAATCTCT CGCCCCAGGC CACCATCCCG
AAAATAGGCA GCGTTGATCC CGTTGACATG GCGACCGGCT TCTGGATGTA CAGCAACACC
GATCTTACCC TGTCCGGCGG GGCGGGGGGC TTGAGCCTCA GGCGTTCCTA CAACAGCGGC
AGCAACAACA TAAAGGACTC ACTCGGTTAC GGTTGGTCCC ATAACTATCA TCTTTACGTG
GAACCCCACT CAAGCACCCC CTTCGGCCTC GGCCAGCGCC AGCCCGTGGA CGCCGCGGCC
CTGATCGTCG CCTCGGTCGC CACCCTGGAT GTCATGAACG GCACCCCTGA CGTGAAATCA
TGGCTGACGG GAGCGCTCAT CGGCAAATGG GCAATGGACA CCCTCACCAA CAACGCGGCC
GGCTGCCACC TGGAGACTGA CGTCCTCACC TTCGTGAAGC TGCCGGACGG CTCATTTGCC
TCGCCTCCCG GCGTCACCTC AACGCTGGTG AAAAACGGCA GCCTCTACCA GGTAAATGAA
CGCTTCGGCC GCACCGTCAC CTTTGACGGC AGCAACAACG CCAACGCCAT GACCGACGCC
GACGGCAATG GGGTCACCTT CACCTACACC GGCGGGAAAC TCAGCAAGGT AACCGACAAT
TTCGGCCACA GCCTCGACTT CACCTATACC GGGGATCTCC TCACCTCCGT GACCGACAAG
GCGGGGCGCA GCGTTGCCTA CGGCTACACC GGCACCGACC TCACCACCTA CACCGATCCG
GAAGGAAAGG TCTGGACCTA TGGGTATGAC ACCAGCCACC GGATTCTGAC ACTGAAAAAC
CCCCGCACCG TCACCACCGT CACCAACGTC TACGATGCCT TTGGCCAGGT ACAGAGTCAG
ACCATGCCCA GGCAGACCGG CACCGCCACC TACAACCTCT ACTTCAACGG CTACCGCAAC
ATCGAGGAGG ACGGCACCGG CCACCAGACC ATCTACCATT TCGACGAGCA GAAACACCTC
CTGGGGGTGG AGAACACCCT GGGCCAGAGA ACCACCAGAT ACTACGACGG TCAGGGGCAT
GTGGTCGCCG AGACCGATCC CCGAGGGTTC AGCACCGGCT ATCTCTATGA CGGCAACCAT
AACCTGACCA GAGTAACCGA CCCGTTCATC AGGTACACCG ACACCACCTA CGACAGCCAG
TTCCGTCTTA CCGACGTGAC CGACCCCCTG GGGCACACGA CTCACACCGA TTACGACACC
AAGCATCACC CCGTCAAAAC CACCGTCTAC CCGGCCACAG GCCAATCCAT CTACACCCAG
AAAAGCTACT ATGCCAACGG CCTCGTGAAC ACCACCACCG ACGGCAGAGG TGTCATCACC
ACCCTGACCC AGGATACCTA CGGCAACCCG GCCACCAGCA AGACCTCCAC GGCCCCTGCC
ATCACGTATG TCTACGACGG AATCGGCCGA ATGACCTCCC TCACCGACCA GGAAGGGGCC
AAGACCTCCT TTACCTACGA CAAGAGGAGC CTCCCCACCG GCAGCACCGA CCCGCTGACC
AAGAACACCT CGCTCACCTA CTACGACGAC GGCACCCTCT GGACGAAAAC GGACCGCAAC
GGCAAGACCA CCACCTTCAC CTACACCCCT ACCGGCAAGA CGAACAGCAT CGCCTATGCC
GGGGGGACAA GCGTAACGTA CACCTACGAC CAGGACGACA ACCTGACCAA AATGCTGGAC
TCTCTGGGGA CAACCACCTA CGGCTACGAC GACGCCAACC GCCTCACCAG CACCACCGAC
CCACGGGGCT TCGCCATCGG CTACGACCGC GACGCCAACG GCAACATCTC CAGAATCACC
TATCCCGGCA ACAAGACGGT GAGCTACACC TACGATGCCC TGAACCGGAT CAAAACCGTC
ACCATCGACT GGCTCAATAA AACCGCCACC TACACCTACG ACGATGCAGG AAGGATGCTT
GATCTTACCC ACTTCAACAA TACCTACACC CGCTACACCC ACGACAACGC CAACCGGCTC
ACCGCTCTCG AAAACCGGCT CTCCAACGCC GGAAGCCCCA TAGCTACCTA CGCCTTCACC
CTGGACGGAA ACGGCAACCG CACCGGCGTC ACCCAGACCG TGCCCATCGC GCTGAACGCC
ACCGCCTCAA ACACGAATTT CACCATGAAC CTCCAGAAGA ACCGCCTCGC CCAGGCTGGG
AGCACCAGCT TTACCTACGA CAACGAAGGG CAGCTTGCCA CCAGGACAGG TGACATCTAT
ACTTTCGACG ACGCCCATCG GCTGACCAAT ATCACCGGCT CGGTCAGCTA CCAGTACAAA
TACGACGGCG CCGGGAACCG CCTGGAGGCG ACCCGAAACG GCGTAACAAC GAGGTACATC
TACGACGCCA ACGGCAATCT CCTGGCCGAG GCGGACGGCA CCAACGCCAT CACCCGTTAC
TACATCTACG GCAATGGCTT GCTCGCCATG GTGGCCTCGG GCAACCAGCC GTACTGTTAC
CACTTCGACG CAACCGGCCA CACCGTGGCC TTAACCGATG CCGGCGCTAA TGTGGTGAAC
AGGTATGCCT ACACTCCCTT CGGGGCTATC GGCAACCAGC AGGAAACCAT CAGCCAGCCG
TTCAAGTATG TGGGAAAATA TGGCGTCATG AGCGAGCCGA ACGGCTTCTA TTACATGCGA
GCACGGTATT ATGATGCCAG CGTCGGCAGG TTCATCAGCG AAGACCCCAA GGGCTTCGAC
GGTGGGGATG TGAACTTGAT GGTTTATGTT GGCAACAACC CCGTCATGTT GATTGATCCT
AATGGTTTAA GTGCTTTCGG AAAAATCTGG AACCTTCCCA ATACCCTATT AGGACTGGCT
TGGGGCGGTA TTGGAATGCT TGGAGGTGCA CACGCATCCA TTGGAAACAA TGCAATTCAA
TTCGAAAAAC ATCCTTTTAT GTTTGGCGCG ATTACATTAG GGAACACCAT ATCTTACGCA
AAAGACTTCG GACCAAATAC AATGCTGGAC AATGGCACTG TTGGTAAGCA TGAATCACAA
CATACGATTC AGGGTGAACA GTTGGGGCCG CTTTATCTTC CTTCCAACAT TCTTGGTTTA
GCCGCAGGAC AAATAATCAA TGGAAATACA CATGGCCCTG CAAATTGGAA CGAAAGAGGG
CCACAATCAA CACCGCCAAG TCCTTGGGGA GGATATGGAA AATGA
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| Protein sequence | MGGTRYLIVG ILLMAVLSLC RASFADTVTY GYDDFGRLTA MTTVDATRLT RISYLYDNVG
NFTNQTVTVG ILVNMPDANL RNAVCSALGK NPSDPLTRDD LALLTTLSAA GKGISDLTGL
EWAVNLTSAD LRNNNITSTA PLAGLTKLTV LQLDGNPVAT TAAVPAMGTV GLVLATLLLM
LLTMSQRFRL PGRFIALLGL CFSLSVTTVN AADGPAGPGW LEVQGTPVTP QEADAFYQAK
GVIQPLSAPL GSITPQSATT ATPEIAALAR SLKNDPRLIY EYVRNNVDYA PYFGSLKGAT
LTAIEGSGND FDQASLMISL LRASGYTAQY VYGTMTIPVG GDPNQKDMQH WLGVDATSSV
IGTVLANGGI PYSQSGTSFT VNRVWAQATI AGATYLFDPA FKPHQTITGI DLKTAMGYST
SGLLAAAGGT VGTDYVQSLN EAGLKSALDG YTLNLAAYIR ANYPNAKTSE IIGGSAIVPQ
TLAAFPTSLD FATTVTATWT DIPDAYVHKV RIQHGKIDQT LNIPDLAGQK LSIVYRTGSI
TTASAVAAPA TTEPQVNLAP LPTATTPVDG QLTITPAGPT DTTLPNIIVP GSYLDGSKTI
VPMATGSANF GSIYPASAGA SSTSMTWGPI TNPNSVTVQI VVTLTSNPQG AYSITQYAGT
NNVAPGASIS PKVVFSNAGQ TAGTKTGQLH IQWFYNGTPI TGADSYYDLT GYVANAMSLG
GYGLNAQAYM NTPYTGNARL SNNGSLPLAV TAKTLTGTGA ARFQLVSGTA ATTLAASTFQ
DIPVTYLADV HGTQTASINM GFTYDGMTYS ATNYLPLQGQ AIYKPDFTGS LGFNAGTPYL
AYPVDGTAHL ANAGSQPLTV TGFSITGTDA ARFTITGGNA AGTIASGGHR DITIRYLANS
VGTHSATLHI TYTYDGIANS IDLNLVGQTL STPVAQLWLD DTMLAEELEP VTGVDLSTMT
ISVMHQYTGS FADQSVNYTL TRGSTYAIVY DFGGSRLGKL LEKRERQMQA YRESGLADTS
RQVLTESLNV IGQTWMRDTT LDANLLSQIG GVIDLRQHRF GIVAQETGYY IDVKAQVSTV
SPIHGDTIAR DAYFRTTGHL ASAMEHGVLE QMQANSPAVS TVKLLQLNNA AGKKAFMVTS
ANYAAIKPQL ANYSTDDLNS FQTSVTSGNT LILPENGKIP LQVWSGKGYI DFNMGGTSRH
VGMIIGGGYN GGYGAIKAPV AVNTEMAHVN VNLSPQATIP KIGSVDPVDM ATGFWMYSNT
DLTLSGGAGG LSLRRSYNSG SNNIKDSLGY GWSHNYHLYV EPHSSTPFGL GQRQPVDAAA
LIVASVATLD VMNGTPDVKS WLTGALIGKW AMDTLTNNAA GCHLETDVLT FVKLPDGSFA
SPPGVTSTLV KNGSLYQVNE RFGRTVTFDG SNNANAMTDA DGNGVTFTYT GGKLSKVTDN
FGHSLDFTYT GDLLTSVTDK AGRSVAYGYT GTDLTTYTDP EGKVWTYGYD TSHRILTLKN
PRTVTTVTNV YDAFGQVQSQ TMPRQTGTAT YNLYFNGYRN IEEDGTGHQT IYHFDEQKHL
LGVENTLGQR TTRYYDGQGH VVAETDPRGF STGYLYDGNH NLTRVTDPFI RYTDTTYDSQ
FRLTDVTDPL GHTTHTDYDT KHHPVKTTVY PATGQSIYTQ KSYYANGLVN TTTDGRGVIT
TLTQDTYGNP ATSKTSTAPA ITYVYDGIGR MTSLTDQEGA KTSFTYDKRS LPTGSTDPLT
KNTSLTYYDD GTLWTKTDRN GKTTTFTYTP TGKTNSIAYA GGTSVTYTYD QDDNLTKMLD
SLGTTTYGYD DANRLTSTTD PRGFAIGYDR DANGNISRIT YPGNKTVSYT YDALNRIKTV
TIDWLNKTAT YTYDDAGRML DLTHFNNTYT RYTHDNANRL TALENRLSNA GSPIATYAFT
LDGNGNRTGV TQTVPIALNA TASNTNFTMN LQKNRLAQAG STSFTYDNEG QLATRTGDIY
TFDDAHRLTN ITGSVSYQYK YDGAGNRLEA TRNGVTTRYI YDANGNLLAE ADGTNAITRY
YIYGNGLLAM VASGNQPYCY HFDATGHTVA LTDAGANVVN RYAYTPFGAI GNQQETISQP
FKYVGKYGVM SEPNGFYYMR ARYYDASVGR FISEDPKGFD GGDVNLMVYV GNNPVMLIDP
NGLSAFGKIW NLPNTLLGLA WGGIGMLGGA HASIGNNAIQ FEKHPFMFGA ITLGNTISYA
KDFGPNTMLD NGTVGKHESQ HTIQGEQLGP LYLPSNILGL AAGQIINGNT HGPANWNERG
PQSTPPSPWG GYGK
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