| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gmet_1379 |
|---|
| Symbol | |
|---|
| ID | 3740643 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter metallireducens GS-15 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007517 |
|---|
| Strand | - |
|---|
| Start bp | 1542427 |
|---|
| End bp | 1544166 |
|---|
| Gene Length | 1740 bp |
|---|
| Protein Length | 579 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 637778661 |
|---|
| Product | histidine kinase |
|---|
| Protein accession | YP_384338 |
|---|
| Protein GI | 78222591 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.138084 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 35 |
|---|
| Fosmid unclonability p-value | 0.0193369 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTGAAAT TTATCGAAGC CAATAAAAAA CGCATCGTCA TCGTTACCTA TATCCTGCTC
TTCTGCATGT TCTGCTTCTT TTCCCTGATG GATCTGTACA AGAGGACTTC CGACTACGCC
TATTTCGCCA ACAAAATCAA CTCATTCATC AAGCATGCCC ACGACAGCGA ATCGGAGTAT
CTCTGTTCGC GCCTGGTCAA CTACGTAAGC GACATCGCAA AACAAAAGCA CTTCGCCGAA
CTGCTGAAAG CAGGCGACGC AGAAGCCCTG GAGAAGGTGG CCAATCACGC TTTCTACGAC
TTCGGGAAAC GCTATGTGCC GGTGATCTCG GTCCTCATCT ATGACGGCGA TGGAAAACTC
AGATATCATA TGACACCGCC GTCGATCACC CATGACCCCG AGGAATTAAG ACCGAACGTT
AGCAAAGAGG TCTTTGCCAC GAAAAACTAC ACCTACGGGT ATGAGACCAA CATCGTTCCC
CTCTACTTCT GCATTGTTCT TCCTGTACGG GACGCTCGTT CAAATGTGGA AGGAACGATC
GAGATAGGTG TGGACCTGTC ATTTTTTCAC TACAATCTGA AATGGTTTTT ACACGACGTA
AAGACAGCCA TCTTCTCCAA TGGGAAACTC CTTGAATTTG ACACCGGGGA CAAGACGGAT
TCCGAGGAAT ATGTCTATGA CTATTATAAA AAGCTGAAAT CCAACGACGC CGCGTTCTTC
AACCAGTTCA AAGACAGGAT TGATTTCAGA TGGGCGAAAA ACGACATCAA AATCGGAGAC
AAGTATTACC TGGTGAGTAC GTCCCAGGTA CTTAGAGACA ACCTAGGTCG CGAAGTCGGT
AAATATCTTG TCGCCTACGA CATGACTGAG CTGCGGAACC GGCACTGGGG ATATTTCTAC
GCATGGCTGC TGTTCTTCGC CCTCACCGCC TGCGTCATGC TCTGTATCAA CATGGTCGGG
TTCAGAAAGT ATGAGCACAT CATCACGGAA CAGGACAAGA TGCTGGCCCA GCGGTCAAAG
CAGTGCGCAC TCGGGGAAAT GCTGGGACAC ATCGGACACC AATGGCGACA ACCTCTCTAC
AACCTTTCTC TGATCGTTCA GAACATCGGG CTGCAGAACC AGTACGGCAA ACTGGACGAC
GCCCTGCTCA GCAAGCAGAT TACCCAGGCG AACCAGAACA TCGAATACAT GTCTAACATC
ATAGATGACT GGCGTTCACT GCTCATGTCG GGCAGCAGCC GGACCGTGAT CGAGCTGCAG
AGTTCCGTCG AGCGCGCCAT AGCGATGGTT GCGCCGGTCA TGGAGCAGAG CCGGGTCACC
ATCGAGAACC GGATCACGAC GCCGGTGCAC ACCATGGGTT TCGTGAACGA CCTGGTGCAG
CTGACCATAA ACGTGCTGTT GAATGCGCGC GATCAGCTTT CCCTGGTGCA AAGTGACCGC
TTCATCCTGC TCTCCTGCAA CGAGGAGTCG GGAGGGGTGG TGACGGTCAC CTTCCAGGAC
AACGGTGGCG GGATCCCCGA CCATCTGCTC AAACGCATTT TCGAACCGTA TGTCACCACC
AAGGACAAGG CCGACGGCAC AGGACTGGGA CTGTATCTGT GCCACCAGAT CGTCGAGAAT
CTGGACCAGG GGAAGGTCTG GGCGGAGAAC AGGTCCTTTG AACTGCACGG GGAAACGCAC
TATGGCGCCC GCATCTGCCT GCAGTTCGCC AGAACAACCG AGGGAGGTAA ACAGATATGA
|
|---|
| Protein sequence | MLKFIEANKK RIVIVTYILL FCMFCFFSLM DLYKRTSDYA YFANKINSFI KHAHDSESEY
LCSRLVNYVS DIAKQKHFAE LLKAGDAEAL EKVANHAFYD FGKRYVPVIS VLIYDGDGKL
RYHMTPPSIT HDPEELRPNV SKEVFATKNY TYGYETNIVP LYFCIVLPVR DARSNVEGTI
EIGVDLSFFH YNLKWFLHDV KTAIFSNGKL LEFDTGDKTD SEEYVYDYYK KLKSNDAAFF
NQFKDRIDFR WAKNDIKIGD KYYLVSTSQV LRDNLGREVG KYLVAYDMTE LRNRHWGYFY
AWLLFFALTA CVMLCINMVG FRKYEHIITE QDKMLAQRSK QCALGEMLGH IGHQWRQPLY
NLSLIVQNIG LQNQYGKLDD ALLSKQITQA NQNIEYMSNI IDDWRSLLMS GSSRTVIELQ
SSVERAIAMV APVMEQSRVT IENRITTPVH TMGFVNDLVQ LTINVLLNAR DQLSLVQSDR
FILLSCNEES GGVVTVTFQD NGGGIPDHLL KRIFEPYVTT KDKADGTGLG LYLCHQIVEN
LDQGKVWAEN RSFELHGETH YGARICLQFA RTTEGGKQI
|
|---|
| |