| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gmet_1265 |
|---|
| Symbol | |
|---|
| ID | 3739764 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter metallireducens GS-15 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007517 |
|---|
| Strand | + |
|---|
| Start bp | 1425537 |
|---|
| End bp | 1427075 |
|---|
| Gene Length | 1539 bp |
|---|
| Protein Length | 512 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 637778545 |
|---|
| Product | 2-isopropylmalate synthase |
|---|
| Protein accession | YP_384226 |
|---|
| Protein GI | 78222479 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0119] Isopropylmalate/homocitrate/citramalate synthases |
|---|
| TIGRFAM ID | [TIGR00973] 2-isopropylmalate synthase, bacterial type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.000000029461 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.00000000000565514 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGGCGGAAC TGAAGACCAT CAAGATTTTC GATACAACGC TTCGCGACGG TGAGCAGTCG
CCGGGCAACA GCATGAACAT CGATGAGAAA CTGCGCGTTG CCAAGCAGCT TCTGAAGCTG
AACGTCGATG TCATCGAAGC GGGATTTCCC ATCGCTTCCG AGGGGGATTT CGAGGCGGTC
AAACGGGTTG CCCAGACCAT CAAGGGACCG GAGATCGCTG GCCTTTGCCG TTCCAGCGAC
AAGGATATCG ACCGGGCCTG GGAGGCACTT AAGTACGCAG GTGAGAAGGG GCGTATCCAT
ACTTTTATCG CCACCTCTGA TATCCACATG AAGTACAAGC TGAAGATGAC TCGTGAGCAG
GTGCTTGAGA ATGCGGTCAA AGCGGTGAAG CGAGCGAAAT CCTACACGCC AAATGTGGAA
TTTTCCTGCG AGGATGCCGT CCGTACCGAC CTGGCCTTCT TGGTGCAAAT GGTGGAGGCG
GTAATCGACG CCGGAGTCAC GACGGTGAAT ATTCCCGATA CTGTCGGCTA CACGATCCCC
TTCGAGTACT TCAACATCAT CCGTCACCTC AAGGAAAACG TTTCCAATAT TGAAAAGGCG
GTCATTTCGG TCCATTGCCA CAATGACCTG GGGCTTTCCG TGGCGAACTC CATTGCAGCG
GTTCAGGCTG GGGCAGGTCA GGTGGAGTGT ACCATCAACG GTATTGGTGA GCGGGCGGGA
AACTGCTCCC TTGAAGAGTT CGTCATGGCT ATCAAGACCC GCCACGACAT CCTTCCCTTC
AGGACGAACG TTGACCACGA ACAGATCGTC CCTGCCAGTC GGCTTCTCTC CACTATTACC
GGCATCGGAG TTCAGCCCAA CAAGGCGATT GTAGGGGCCA ACGCCTTTGC CCATGAGTCG
GGCATACATC AGCATGGCGT GCTCATGGAG AAATCGACCT ACGAAATCAT GACTCCGGAA
TCAATCGGGC TCAAGACGAA CGTTTTGGTG CTCGGCAAGC ATTCGGGACG TCACGCATTC
AAGAAGCGGC TTGCGGAACT TGGGTACGAG CTTTCCGATG AAGACCTGAA CCGCGCCTTT
GAGCGTTTCA AGGCCTTGGC TGATCTGAAG AAAGAGGTTT TCGACGAGGA TCTTGACGCA
TTGGTTGCAG ACGAAGTGAT GCGTCCGGCG GAGAAGTTCC GGCTCTCTCA TATCACGGTC
ACGTGCGGTT CCTTTGCGGT CGCCACTTCG ACGGTGCAAA TGGAGATTGA CGGTACGGCG
GTGCGAACTG CCGAACTGGG GGATGGCCCG GTTGATGCGA CTCTCAAGGC AATCAAGAAG
CTGACCAAGA CCAAGGCGAA GCTTCAGCAG TATAATGTCG GATCCATTAC CGGCGGGACC
GATGCCCAAG GCGAAGTGAC CGTGCGGGTG ACAGACGGCA ACGAAACGGT TGTGGGGCGA
GGTTCTTCCA CAGACATAAT TGAGGCGTCG GCAAAGGCTT ATATCAACGC GCTCAATCGA
CTCAATGCAA AGATAGAGCG AATCCACGAA AGTCTGTGA
|
|---|
| Protein sequence | MAELKTIKIF DTTLRDGEQS PGNSMNIDEK LRVAKQLLKL NVDVIEAGFP IASEGDFEAV
KRVAQTIKGP EIAGLCRSSD KDIDRAWEAL KYAGEKGRIH TFIATSDIHM KYKLKMTREQ
VLENAVKAVK RAKSYTPNVE FSCEDAVRTD LAFLVQMVEA VIDAGVTTVN IPDTVGYTIP
FEYFNIIRHL KENVSNIEKA VISVHCHNDL GLSVANSIAA VQAGAGQVEC TINGIGERAG
NCSLEEFVMA IKTRHDILPF RTNVDHEQIV PASRLLSTIT GIGVQPNKAI VGANAFAHES
GIHQHGVLME KSTYEIMTPE SIGLKTNVLV LGKHSGRHAF KKRLAELGYE LSDEDLNRAF
ERFKALADLK KEVFDEDLDA LVADEVMRPA EKFRLSHITV TCGSFAVATS TVQMEIDGTA
VRTAELGDGP VDATLKAIKK LTKTKAKLQQ YNVGSITGGT DAQGEVTVRV TDGNETVVGR
GSSTDIIEAS AKAYINALNR LNAKIERIHE SL
|
|---|
| |