| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gmet_1217 |
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| Symbol | |
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| ID | 3738757 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Geobacter metallireducens GS-15 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007517 |
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| Strand | + |
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| Start bp | 1370838 |
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| End bp | 1371614 |
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| Gene Length | 777 bp |
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| Protein Length | 258 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637778497 |
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| Product | ribosomal large subunit pseudouridine synthase B |
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| Protein accession | YP_384179 |
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| Protein GI | 78222432 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
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| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.00000897909 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.000000206079 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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| |
Sequence |
| Gene sequence | ATGGAAGAAC GGCTGCAGAA AATACTCTCC CAGGCCGGCA TCGCCTCCCG CCGGGAGGCT
GAACGGATGA TCACCGACGG GCGCGTGGCG GTGAACGGCA AGCCGGTCAT CGAGCTTGGC
GCCAAGGCTG ACTCCTCCCG CGACGCTATC ACTGTTGACG GCAAGCCGGT CACCGTGGAC
GAGAAGCGGG TCTACATCCT TCTCAACAAG CCGGTGGGGT ATGTGACCAC CCTCAAGGAC
CCCGAGGGAC GTCCCATTGT CACCGAGCTC CTGAAGGGAC TCGGCGTTCG GGTTTTCCCC
GTGGGACGGC TCGACTACAA CACGGAGGGG CTCCTTCTCC TCACCAACGA CGGGGAATGG
GCCAACCGCC TTGCCCATCC CCGCCACGAG GTGGACAAGG AGTATCTCGT CCGGGTGAGG
GGGACGGTCG CCCGGGAGCA GATCACCCGC CTGGAGCAGG GGATTGAGTT GGAGGACGGC
AAGGCCGCGC CGGCACGGGT TTCGGTGACC AAGCAGAGCG ACAACAATAC CTGGGTTTCC
ATCACCATCC ACGAGGGGCG CTACCGGCAG GTCCGCCGGA TGTGCGAGGC AGTCAGCCTC
TCCGTGGTGC GGCTCCGGCG GGTGCGCTAC GGCGCCCTCT CCATGGGAGA CCTGAAGATC
GGCGCGTATC GGCATCTCAC GTCCGGAGAA GTGGCTGCGC TGTCGGACGG GAAGATCGGC
GCACGCGGTG GGGCGCCGCG GCGCCGGGGG CCTTCTGCTC CGCCACGGAA AGGATAA
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| Protein sequence | MEERLQKILS QAGIASRREA ERMITDGRVA VNGKPVIELG AKADSSRDAI TVDGKPVTVD
EKRVYILLNK PVGYVTTLKD PEGRPIVTEL LKGLGVRVFP VGRLDYNTEG LLLLTNDGEW
ANRLAHPRHE VDKEYLVRVR GTVAREQITR LEQGIELEDG KAAPARVSVT KQSDNNTWVS
ITIHEGRYRQ VRRMCEAVSL SVVRLRRVRY GALSMGDLKI GAYRHLTSGE VAALSDGKIG
ARGGAPRRRG PSAPPRKG
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