| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gmet_1067 |
|---|
| Symbol | |
|---|
| ID | 3739514 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter metallireducens GS-15 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007517 |
|---|
| Strand | + |
|---|
| Start bp | 1189036 |
|---|
| End bp | 1189890 |
|---|
| Gene Length | 855 bp |
|---|
| Protein Length | 284 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 637778345 |
|---|
| Product | CRISPR-associated Csh2 family protein |
|---|
| Protein accession | YP_384032 |
|---|
| Protein GI | 78222285 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG3649] Uncharacterized protein predicted to be involved in DNA repair |
|---|
| TIGRFAM ID | [TIGR01595] CRISPR-associated protein, CT1132 family
[TIGR02589] CRISPR-associated protein, Csd2 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 64 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 39 |
|---|
| Fosmid unclonability p-value | 0.0472036 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCATTC AGAACCGCTA TGACTTTGTA CTGTTTTTCG ACGTGAAGGA CGGCAACCCC
AACGGCGACC CTGACGCCGG CAACCTTCCC CGCATTGATC CGGAAACCGG CCATGGGCTG
GTGACGGACG TCTGCCTGAA GCGGAAAGTG CGGAACTACG TTCAATTGGA TAAGGAGCTG
TCGCAGGGGT ATGACATCTT TGTCAAAGAG AAGGCGATTC TCAACAACCT GATTGATGAG
GCCCACGAAC AGGAAAACGT AAAGGCAAAG GAAAAGGGTG AAAAAACCGA GGCCGCTCGG
CAGTTCATGT GTGGCAAATA CTTCGACGTT CGGACTTTTG GTGCGGTCAT GTCCACCGGC
AAGAACGCAG GCCAGGTTCG TGGCCCGGTC CAGTTGACCT TTGCCCGCAG CGTCGACCAG
ATCGTGCCGC TGGAGCACAG CATCACCCGC ATGGCAGTGG CAACTCCTGC CGAGGCTGAG
AAGCAGGATG GGGATAACCG CACCATGGGA CGCAAATTTA CCGTCCCCTA TGCCCTCTAT
CGTTGCCACG GCTTCATTTC TGCACCGCTG GCGGCCCAGA CCGGTTTCAG CGAGGAAGAC
CTTGAACTTT TCTGGCAGTC ATTGGTCAAC ATGTTCGAAC ACGATCGCTC GGCGGCCCGC
GGCCAGATGT CGGCCCGCAA GCTGATCGTC TTCAAGCATG ACTCTAAAAT GGGGAACGCT
CCGGCACACC ACCTCTTTGA TCTGGTCTCT GCCGAGGCAT CAGAGACGCC AGTCCGCAGC
TTCGATCAGT ACGATATCTG TGTGCCCACT CAGGAGAATA TGCCGACAGG TGTGACGGTC
GTCGAGAAGT TGTAA
|
|---|
| Protein sequence | MTIQNRYDFV LFFDVKDGNP NGDPDAGNLP RIDPETGHGL VTDVCLKRKV RNYVQLDKEL
SQGYDIFVKE KAILNNLIDE AHEQENVKAK EKGEKTEAAR QFMCGKYFDV RTFGAVMSTG
KNAGQVRGPV QLTFARSVDQ IVPLEHSITR MAVATPAEAE KQDGDNRTMG RKFTVPYALY
RCHGFISAPL AAQTGFSEED LELFWQSLVN MFEHDRSAAR GQMSARKLIV FKHDSKMGNA
PAHHLFDLVS AEASETPVRS FDQYDICVPT QENMPTGVTV VEKL
|
|---|
| |