| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gmet_0891 |
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| Symbol | |
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| ID | 3738850 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Geobacter metallireducens GS-15 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007517 |
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| Strand | + |
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| Start bp | 981935 |
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| End bp | 984211 |
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| Gene Length | 2277 bp |
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| Protein Length | 758 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637778170 |
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| Product | DNA topoisomerase I |
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| Protein accession | YP_383858 |
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| Protein GI | 78222111 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0550] Topoisomerase IA
[COG0551] Zn-finger domain associated with topoisomerase type I |
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| TIGRFAM ID | [TIGR01051] DNA topoisomerase I, bacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.00000000570299 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 1.1513e-16 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGCCACAAC ACCTCGTCAT CGTCGAATCT CCGGCCAAGG CCAAGACCAT CGAGAAATTT
CTCGGCAAGG ACTTTCGGGT CATGGCTTCC TACGGCCACG TACGCGCCCT CCCCAGCAAG
CAGGGGTCCG TGGATGTCGC CAACGATTTC GAACCCAAAT ATGCCATTCT CCCCGAGAGC
AAGCGGCACA TCGACGCCAT CAAGAAGGAG CTGAAGGAGA GCGACATCCT GCTCTTGGCC
ACTGACCCCG ACCGCGAAGG GGAGGCGATC TCCTGGCACC TGCTGGCGGC CCTCGGCATG
GACAAAAAGA AAAACGCCGT GCCGGTGAAG CGGGTCGTGT TCCACGAGAT CACCAAGGAC
GCCATCGTCC ACGCCGTGGA AAACCCCCGG GACATCTCCC TGGAGTTGGT GGACGCCCAG
CAGGCCCGCT CCATCCTTGA CTACCTGGTC GGCTTCAACC TCTCCCCTTT CCTCTGGAAA
AAAATCCGCT ACGGCCTCTC TGCCGGACGG GTCCAGTCCG TGGCCCTGCG GCTCATCTGC
GAGCGGGAGA AGGAGATCAA GGCTTTCCAG GAACAGGAGT ACTGGACCAT CGGCGCGGAG
CTGGGCACCG GCAAGGGGCA GAAGTTCTCC GCCAACCTAG TGGAGGCCGA GGGGAAGAAA
CTCGGCAAGT TCGATATCCC CGACGGCACG GCGGCCGACC GGCTCGTGAA GGCCCTGGAG
AACGGTGCCT ACACCGTCGA CAAAGTGGCG AAGAGCGAGC GCAAACGGAC CCCAGCGCCG
CCGTTCACCA CCTCCACCCT CCAGCAGGAG GCGGCAAGAA AGCTCGGCTT CTCGGCCAAG
AAGACCATGT CCACGGCCCA GAAGCTCTAC GAAGGGGTCG CCGTGGGGGA CGAGGGGCTT
GTCGGTCTCA TCACCTACAT GCGTACCGAC AGCGTGGTGC TGTCGAACCA GGCCCTCCAG
GAGGCCCACG AGGTCATCAC CTCCCTCTAC GGGAAGGAGT ACGCCCTCGC CAAGCCCCGC
TTTTACAAGA ACAAGGCGAA GAACGCCCAG GAGGCCCACG AGGCGGTCCG CCCCACCTCC
ATCGCCCGCA CCCCGGTCGA GGTGAAGAAG TACCTCTCCT CCGACCAGTT CAAACTCTAC
GATCTCATCT GGAAGCGGAC CGTGGCCTGC CAGATGGCCG AGGCGCTTCT GGATCAGACC
TCTGTCGACA TCGGCGCCGG CGAGGGCTAT CGTTTCCGTG CCGCCGGCAC CGTGATCCGC
TTCCCCGGCT TCATGAAGCT CTACATCGAG GGAGTCGACG ACCAGGCCGA GGAGAAGGAA
GGGACTCTGC CTCCCCTCAC GGAAGGGGAA CTCCTGAAGC TCCAGAAGCT CGTTCCGGAG
CAGCATTTCA CCCAGCCCCC ACCGCGGTAC ACCGAGGCGA GCCTCGTGAA GACCCTGGAG
GAGTACGGTA TTGGCCGTCC CTCCACCTAC GCCTCCATCA TGAACACGCT CCTGGAGCGG
AAATACGCCC GCCTCGACAG CAAGCGCTTC GTTCCCGAGG ATGTGGGGAT GGTGGTGAAC
GATCTCCTCA CCAACCACTT CACCCAGTAC GTGGATTACA ATTTCACCGC CAGCCTCGAA
GAGGAGTTGG ACCGGGTCTC CCGGGGTGAG AAGCAGTGGA AGCCCCTCCT TCATGACTTC
TGGGGCCCCT TTAGTTCCCT CCTGAAACAG AAAGAGGGGG AGGTGAGCAA GGCGGACCTC
ACCACCGAGG CCACCGACGA ACTCTGCCCC GACTGCGGCA AGCCGCTGGT GGTGAAGCTT
GGGAAGCGGG GGAAGTTCAT CGCCTGCTCC GGCTACCAGG AAGGGTGCAC CTATACCCGC
AACATCGCCC AGGGGGAGCA GCAGGAGCCG GCAGAACCGG TCTTCTCCGA GGAGAAGTGC
GACAAGTGCG GCAGCCCCAT GCTCATCAAG GATGGCCGCT TCGGAAAGTA CCTGGCCTGC
TCCGCCTATC CCGCCTGCAA GAACATCCAG CCCCTCGTAA AGCCCAAGGG GACCGGCCAC
ACGTGCCCCG AGTGCAAGGA AGGGGAGCTG ACCGAGAAGA AGTCCCGCTA CGGCAAGATG
TTCTACTCCT GCAACCGCTA CCCCCAGTGC AAGTTCGCCC TCTGGGATCC CCCCCAGCCG
GGGCCGTGCC CCAAATGTGG CTTCCCGCTC CTGGTGAAAA AGGTCTACAA GCGGGAAGGG
GAGTTCCTCA AGTGCCCGAA AGAGGGGTGT GACTACCGGA CCGAAGGGAA GAAGTAG
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| Protein sequence | MPQHLVIVES PAKAKTIEKF LGKDFRVMAS YGHVRALPSK QGSVDVANDF EPKYAILPES
KRHIDAIKKE LKESDILLLA TDPDREGEAI SWHLLAALGM DKKKNAVPVK RVVFHEITKD
AIVHAVENPR DISLELVDAQ QARSILDYLV GFNLSPFLWK KIRYGLSAGR VQSVALRLIC
EREKEIKAFQ EQEYWTIGAE LGTGKGQKFS ANLVEAEGKK LGKFDIPDGT AADRLVKALE
NGAYTVDKVA KSERKRTPAP PFTTSTLQQE AARKLGFSAK KTMSTAQKLY EGVAVGDEGL
VGLITYMRTD SVVLSNQALQ EAHEVITSLY GKEYALAKPR FYKNKAKNAQ EAHEAVRPTS
IARTPVEVKK YLSSDQFKLY DLIWKRTVAC QMAEALLDQT SVDIGAGEGY RFRAAGTVIR
FPGFMKLYIE GVDDQAEEKE GTLPPLTEGE LLKLQKLVPE QHFTQPPPRY TEASLVKTLE
EYGIGRPSTY ASIMNTLLER KYARLDSKRF VPEDVGMVVN DLLTNHFTQY VDYNFTASLE
EELDRVSRGE KQWKPLLHDF WGPFSSLLKQ KEGEVSKADL TTEATDELCP DCGKPLVVKL
GKRGKFIACS GYQEGCTYTR NIAQGEQQEP AEPVFSEEKC DKCGSPMLIK DGRFGKYLAC
SAYPACKNIQ PLVKPKGTGH TCPECKEGEL TEKKSRYGKM FYSCNRYPQC KFALWDPPQP
GPCPKCGFPL LVKKVYKREG EFLKCPKEGC DYRTEGKK
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