| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gmet_0867 |
|---|
| Symbol | rpsA |
|---|
| ID | 3739296 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter metallireducens GS-15 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007517 |
|---|
| Strand | + |
|---|
| Start bp | 956473 |
|---|
| End bp | 958233 |
|---|
| Gene Length | 1761 bp |
|---|
| Protein Length | 586 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 637778145 |
|---|
| Product | 30S ribosomal protein S1 |
|---|
| Protein accession | YP_383834 |
|---|
| Protein GI | 78222087 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0539] Ribosomal protein S1 |
|---|
| TIGRFAM ID | [TIGR00717] ribosomal protein S1 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.000000000314961 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 39 |
|---|
| Fosmid unclonability p-value | 0.0879612 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTGAAG ACAAGGACAT GAAGAACCGC AACGCCATGA CGATCAAGCG ATTCGTCGAT
GTGGAGGAGG ATGGGGAGCA CGGGGGGTCG GGGGAGTTCG CCGAGCTTTT CCAGGAGAGC
ATCAAGCAGC ACCGCGTGGG AGAGGTCGTC ACCGGCAAGG TTGTTCACAT CAGCAATGAA
TTTGTGCTTG TCGACATCGG CTACAAGTCC GAGGGGTGCA TTGCCATAGA CGAATTCCTT
GACGAAGACG GCAATCTGAC CGTCAAGGTC GGCGACGAAG TGAAGGCGCT CTTCGAGCGG
AAGGAGAACC AAAAGGGGTA TGCGGTTCTC TCGCGGCGCA AGGCCGAGCG TCTGGCCGTC
TGGGATGTTA TCGATGAAGC CGGCGGCGAA GGTGGCATCA TCGAAGGCAA GATTACCGGT
AAGGTAAAGG GTGGGCTTAC CGTCGATATC GGCGTTCAGG CTTTCCTTCC CGCCTCCCAG
GTCGATCTCC GGCCCGGGGG CAACCTCGAC AAATACATCG GCACCACCGA CCGGTTCAAG
GTCCTCAAGC TCAACAAAAA GCGGGGCAAT ATCGTTCTCT CCCGCAGGGT ACTCATGGAG
GAGGAACGGG AGTCTTCGCG CAAAGAGACC CTCGCCACCC TTGCCGAAGG GCAGGTCCGT
GAAGGGGTGG TCAAAAATAT TACCGATTAT GGCGCCTTTG TGGACATCGG CGGTGTTGAC
GGCCTCCTCC ACGTGACCGA TATGTCGTGG GGCCGCCTCG GGCATCCTTC CGAGATTCTC
AAGCCGGGCG ACAAGCTGAA TGTCAAGGTG CTCAAGTACG ACCAGGAAAA AGGGAAAATC
TCCCTTGGCC TCAAGCAGGT TACCCCTGAC CCCTGGGTCT CCGTAGAGCA GAAGTACAAC
CAGGGCGACC GGGTAAAGGG GAAGGTTGTG AGCCTGACCG ATTACGGGGC ATTTATCGCC
CTGGAGGACG GGGTAGAGGG GCTTGTCCAT GTCTCTGAAA TGTCCTGGAC CCGCAGGCTG
CGTCATCCCT CGGAAATCCT TACCGTGGGC GACGAGGTGG AAACGGTGGT CCTCGGTGTC
GATATGGGCA ATCGCCGTAT CTCCCTCGGC CTTAAGCAGG TGCAGGTGAA CCCCTGGACG
CAGCTTGAGG AGAAGTACCC CGTGGGCACC AAGCTTGAGG GGCAGATCAA GAGCATCACC
GACTTCGGTG TTTTCATCGG CATCGAAGAG GGGATCGACG GTCTTGTCCA TGTCTCCGAC
ATCTCGTGGA CAAAACGGAT CAAGCACCCG GGTGAAGTGT TCACCAAGGG GCAGACGGTC
CAGGCTGTCG TGCTGAACAT CGACCCCGAG AACGAGCGCC TCTCCCTCGG CATCAAGCAG
CTTCTGCTCG ATCCCTGGAG CGAGATTCCG GTCAAGTATC GTCCCGGTAC CCGCGTTCAC
GGCAAGGTCA CGTCGGTCAC CGACTTCGGT GTCTTCCTGG AGATCGAGGA AGGGATCGAA
GGGCTCATTC ACGTGTCTGA ACTTTCACGG GAAAAGGTGG CATCTCCCAA GGAGTTCACC
AATGTCGGCG ACGAACTTGA CGCGGTGGTG CTCAGCGTCG ACGAGTCGGA AAAGAAAATT
GCCCTTTCCA TCAAATCTCT CCAGATGGCG GCTGAAAAAG CAGAGATCGA GTCGTACATG
CAGGCCCAGG GTGAGGCCAC GTCCAACCTC GGCGAGCTTC TCAAGGTGGG GTTCCGGAAA
AACGGTGACG GAAACGACTA A
|
|---|
| Protein sequence | MSEDKDMKNR NAMTIKRFVD VEEDGEHGGS GEFAELFQES IKQHRVGEVV TGKVVHISNE
FVLVDIGYKS EGCIAIDEFL DEDGNLTVKV GDEVKALFER KENQKGYAVL SRRKAERLAV
WDVIDEAGGE GGIIEGKITG KVKGGLTVDI GVQAFLPASQ VDLRPGGNLD KYIGTTDRFK
VLKLNKKRGN IVLSRRVLME EERESSRKET LATLAEGQVR EGVVKNITDY GAFVDIGGVD
GLLHVTDMSW GRLGHPSEIL KPGDKLNVKV LKYDQEKGKI SLGLKQVTPD PWVSVEQKYN
QGDRVKGKVV SLTDYGAFIA LEDGVEGLVH VSEMSWTRRL RHPSEILTVG DEVETVVLGV
DMGNRRISLG LKQVQVNPWT QLEEKYPVGT KLEGQIKSIT DFGVFIGIEE GIDGLVHVSD
ISWTKRIKHP GEVFTKGQTV QAVVLNIDPE NERLSLGIKQ LLLDPWSEIP VKYRPGTRVH
GKVTSVTDFG VFLEIEEGIE GLIHVSELSR EKVASPKEFT NVGDELDAVV LSVDESEKKI
ALSIKSLQMA AEKAEIESYM QAQGEATSNL GELLKVGFRK NGDGND
|
|---|
| |