| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gmet_0816 |
|---|
| Symbol | |
|---|
| ID | 3738974 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter metallireducens GS-15 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007517 |
|---|
| Strand | + |
|---|
| Start bp | 899262 |
|---|
| End bp | 902708 |
|---|
| Gene Length | 3447 bp |
|---|
| Protein Length | 1148 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637778094 |
|---|
| Product | pyruvate carboxylase |
|---|
| Protein accession | YP_383783 |
|---|
| Protein GI | 78222036 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1038] Pyruvate carboxylase |
|---|
| TIGRFAM ID | [TIGR00514] acetyl-CoA carboxylase, biotin carboxylase subunit
[TIGR01235] pyruvate carboxylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.000000167673 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | unclonable |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.00000000644662 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGAGAAGA GAAAGTTCAG GAAGGTAATG GCCGCCAACC GCGGCGAGAT TGCGATTCGT
ATTTTCCGGG CCTGCACGGA GCTCGGGATC AGCACCGTTG CCATATACTC GGAGGAGGAT
AAGCTGTCGC TCCACCGTTA CAAGGCCGAC GAGGCATATC TGGTGGGGAA GGGGAAGAAT
CCCATCGACG CCTATCTTGG TATCGACGAG ATCATCGCCA TCGCCAAGAA GTATGACGTG
GACGCCATCC ATCCCGGCTA CGGCTTCCTC TCGGAGAACG CCGAGTTCGC CGAGAAGTGC
GAAGCGTCGG GGATCGCCTT CATCGGCCCC ACGGCCGAGA TGCAGCGTGC CCTGGGGGAC
AAGGTGTCGG CCCGCAAGGT GGCCATGGCC GCCGGCGTCA CCACCGTCCC CGGCACCGAG
GACCCCATCG AGCACGAGGA AGAGGCCCTC ATCTTCGCCA AGAACTACGG CTACCCCATC
ATCATCAAGG CGGCGGCCGG TGGCGGCGGG CGCGGCATGC GGGTGGCCCG GACCAAGAAG
GAGCTCCTCG AAGGGCTCGT GGCGGCCCGC AGCGAGGCCA AGGCGGCCTT CGGCAACCCA
GCGGTCTTCC TGGAGCGCTA CATTGAGAAT CCGAAGCATA TCGAGGTGCA GGTCCTGGGC
GACATGCACG GCAACCTGGT CCACTTCTTC GAGCGGGACT GCTCCATCCA GCGCCGCCAC
CAGAAGGTGG TGGAATTCGC CCCGGCCCTC TGCCTGAGCC AGGAGACCCG CGAGGCGATC
TGCGCCGCGG CCCTCAAGAT CGCCGGCCAG GTGGGATACC GCAATGCCGG TACTGTCGAG
TTCCTCCTGG ACCAGGAGGG GAACTTCTTC TTCATCGAGA TGAACCCCCG TATCCAGGTG
GAGCACACGG TGACCGAAAT GATCACCGGC CGCAACCTGG TCCAGGCCCA GATCCTCGTG
GCCGAGGGGA AAAAACTCTC CGATGCCCCC ATCAACATCC CCAACCAGGA AGCCATCGCC
ATGCGGGGGT ACGCCATCCA GTGCCGGATC ACCACCGAGG ACCCGAACAA CAACTTCGCC
CCGGACTTCG GCACCATCAC CACCTATCGC TCCTCGGCGG GTTTTGGAGT GCGGCTCGAC
GCCGGCAACG CCTTTACCGG TTCGGTGATC ACTCCCCACT ATGACTCGCT CCTCGTGAAG
GTCACCTCCT GGGGGCTCAC CTTCGACGAA GCAGCCCACA TCATGAACCG CTCGCTCCAG
GAATTCCGGG TCCGGGGGGT CAAGACCAAC ATCGGCTTCC TGGAGAACGT CATCACCCAC
CGGGTCTTCC TCGACGGCAA GTGTGATACC TCCTTCATCG AGAAACACTC GGAACTGCTG
CAGATTATCG AGAAGAAGGA CCGGGCCACG AAGGTTCTCA GCTTCCTCGG TGACGTCATC
GTCAACGGTT CGCCGGGAAT CACGAAGCCC CTCAAGTCGG CGGAGCTCAT GGAGGCCCAT
GTGCCGGAGG TGGATCTCAC CCAGCCCCGC CCCGCCGGGA GCCGCGACCT CCTCATGAAG
CTCGGGGCCG AAGGGCTCTC CAAGTGGATC CTTGAGCAGA AGAAGCTTCT CATCACCGAC
ACCACCATGC GTGACGCCCA CCAGTCGAAC CTAGCCACCC GGGTCCGCAC CTATGATCTC
CTGAAGATTG CCGAGCCCAC TTCCTATCTC GGTGCCGGGC TTTTCTCCAT CGAGTGCTGG
GGGGGCGCCA CCTTCGACGT CTCCATGCGC TTCCTGAAGG AAGACCCGTG GCAGCGGCTC
CACAAGCTCT CGGAAGCGAT CCCCAACGTT CTCTTCCAGA TGCTCCTGCG GGGCTCCAAC
GCCGTGGGGT ACACCAACTA CCCGGACAAC GTGGTGCAGC GCTTCGTGGA GGAGGCGGCC
TCCTCCGGCA TAGACATCTT CCGGGTCTTC GACTCCCTCA ACTGGACCCG CGGCATGGCC
GTAGCCATGG AGGCGGTCCG CAAGAGCGGC AAGATCTGCG AGGCGGCCAT CTGCTACACC
GGCGACATCA CCGATCCGAC CCGGGACAAG TATCCCCTGG AATACTACGT GAACATGGCC
AAGGAACTGG AGCAGATGGG GGCCCACATC CTCGCCATCA AGGACATGGC TGGCCTCCTG
AAGCCCTTCG CCGCCTACAA ACTGGTGAAG GCCCTCAAGG AGAACATCGG CATCCCGGTC
CACCTCCATA CTCACGACAC CTCCTCCAAT GGGAGCGCCA CGCTCCTCAT GGCCTGCCAG
GCAGGGGTCG ACATCGTCGA CGCGGCCCTG TCGTCCCTGT CGGGGCTCAC GGCCCAACCG
AACCTGAACG CCTTGGTGGC GGCCCTGAAG GGGACCGAGT GGGACACCCG GCTGGATGAG
GACGGGCTCC AGAAACTGGC CAACTACTGG GAGACGGTGC GCGACTACTA CGCCCCCTTC
GAGTCAGGGC TCAAGAACGG CACCGCCGAG GTCTACCACC ACGAGATTCC CGGCGGCCAG
TACTCCAACT ACAAGCCCCA GGTGGCCGGC CTCGGCCTCC TGGATCGCTG GGAGGAGTGC
AAGGAGATGT ACCACAAGGT GAACCTCCTC TTCGGCGACA TCGTGAAGGT CACGCCGTCC
TCCAAGGTGG TGGGGGATAT GGCCATGTTC CTCGTGAAGA ACAACCTGGA TGTACAGGAT
GTCTTTACAC AGGGTGATGA GCTTGCCTTC CCCGAGTCGG TCATCGGGAT GTTCAAGGGG
ATGCTGGGCC AGCCTTACCA GGGATGGCCC CGGGAACTCC AGAAGATCAT CCTGAAGGGA
GATGAGCCCA TCACCTGCCG CCCCGGCGAA CTCCTGGAGC CGGCCAATTT CGACGAGGAG
CGGGACAAGG TGGAGGAGAA GGTCGGCCAC GCCGTGGACG ACAAGGCGCT CATGAGCTAC
ATCATGTACC CCCACGTCTA CCCGGAGTTC CACAAGCACC GCCATGAGTA CTCCGACACC
TCGGTCATCC CGACCCCCAT CTTCTTCTAC GGCCTGGAGC CGGGGCAGGA GACCTCCATC
GAGATCGAGG CGGGCAAGAC CCTCATCATC AAGCTGAACG CCATCGGCAA GGTCCACCCC
GACGGCACCC GGCACATCTT CTTCGAGCTG AACGGCAATG CCCGGAGCGT GGTGGTACGC
GACCAGTCGG TTCAGACCGA CGAGTCGGTG CGCGAGAAGG CCGACAAGGG GAACGCCAAG
CACGTGGGGG CGCCGATGCC GGGGAAGGTC CTGAAGCTCA ACGTCAAGGT GGGCGACGAG
GTCAAGGCCG GCGATGTCCT CATGGTCACC GAGGCCATGA AGATGGAGAC CAACATCAAA
GCCAAGGAGG ACGGCATCGT CGCCGAGGTG AAGTTCAAGG AAGGCGACAA GGTGGAGAAG
GAGGATCTTC TCATCGTTAT GGGGTAA
|
|---|
| Protein sequence | MEKRKFRKVM AANRGEIAIR IFRACTELGI STVAIYSEED KLSLHRYKAD EAYLVGKGKN
PIDAYLGIDE IIAIAKKYDV DAIHPGYGFL SENAEFAEKC EASGIAFIGP TAEMQRALGD
KVSARKVAMA AGVTTVPGTE DPIEHEEEAL IFAKNYGYPI IIKAAAGGGG RGMRVARTKK
ELLEGLVAAR SEAKAAFGNP AVFLERYIEN PKHIEVQVLG DMHGNLVHFF ERDCSIQRRH
QKVVEFAPAL CLSQETREAI CAAALKIAGQ VGYRNAGTVE FLLDQEGNFF FIEMNPRIQV
EHTVTEMITG RNLVQAQILV AEGKKLSDAP INIPNQEAIA MRGYAIQCRI TTEDPNNNFA
PDFGTITTYR SSAGFGVRLD AGNAFTGSVI TPHYDSLLVK VTSWGLTFDE AAHIMNRSLQ
EFRVRGVKTN IGFLENVITH RVFLDGKCDT SFIEKHSELL QIIEKKDRAT KVLSFLGDVI
VNGSPGITKP LKSAELMEAH VPEVDLTQPR PAGSRDLLMK LGAEGLSKWI LEQKKLLITD
TTMRDAHQSN LATRVRTYDL LKIAEPTSYL GAGLFSIECW GGATFDVSMR FLKEDPWQRL
HKLSEAIPNV LFQMLLRGSN AVGYTNYPDN VVQRFVEEAA SSGIDIFRVF DSLNWTRGMA
VAMEAVRKSG KICEAAICYT GDITDPTRDK YPLEYYVNMA KELEQMGAHI LAIKDMAGLL
KPFAAYKLVK ALKENIGIPV HLHTHDTSSN GSATLLMACQ AGVDIVDAAL SSLSGLTAQP
NLNALVAALK GTEWDTRLDE DGLQKLANYW ETVRDYYAPF ESGLKNGTAE VYHHEIPGGQ
YSNYKPQVAG LGLLDRWEEC KEMYHKVNLL FGDIVKVTPS SKVVGDMAMF LVKNNLDVQD
VFTQGDELAF PESVIGMFKG MLGQPYQGWP RELQKIILKG DEPITCRPGE LLEPANFDEE
RDKVEEKVGH AVDDKALMSY IMYPHVYPEF HKHRHEYSDT SVIPTPIFFY GLEPGQETSI
EIEAGKTLII KLNAIGKVHP DGTRHIFFEL NGNARSVVVR DQSVQTDESV REKADKGNAK
HVGAPMPGKV LKLNVKVGDE VKAGDVLMVT EAMKMETNIK AKEDGIVAEV KFKEGDKVEK
EDLLIVMG
|
|---|
| |