| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gmet_0782 |
|---|
| Symbol | |
|---|
| ID | 3739345 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter metallireducens GS-15 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007517 |
|---|
| Strand | + |
|---|
| Start bp | 861917 |
|---|
| End bp | 864127 |
|---|
| Gene Length | 2211 bp |
|---|
| Protein Length | 736 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 637778060 |
|---|
| Product | diguanylate cyclase/phosphodiesterase |
|---|
| Protein accession | YP_383749 |
|---|
| Protein GI | 78222002 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 43 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 81 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACAACAC TCTACAGATC CATAGCCCGT CTCACCACTC TCTTTGCGGG GGCCATAACC
ATTACCGTGG CGGTTCTGGT CCCTGCCGGC TATTTTCTGG TTTCCTACCA GTATCTGCTT
GGCAGCCTCG ATACCCAGGC CGAAGTCAAC TCTCGGGCCG TCACCCGCCT GGTAACGGCA
AATCCCGAGA TGTGGCGGTA TGAAGAGGTC CGGCTCATGG AGCTGTTGGA GCGCCGCAGC
CGGCGGGATA TCCCCGAGGT GCGGCGGGTT CTGGATCTCC AGGGGAAAAC CATCGTGGCG
AGTGCGGACC ATTTGCGTCC GCCGGTGGTG TCGCGGCGCT ATGCCATCTA TGACGCCGGT
CACGCGGTAG CTCAGCTGGA AATTTCCCGT TCCCTCGGCC CCCTGCTGCT CGAAACGGCC
CTGGTGGCCG CCTGCGCGCT GCTGGTGGGA GGGCTCGGTT TCGTCATGCT CCGCACAATC
CCCTTGCGGG CCGTCAACCA GGCTCACCAG TCCCTGGCGG AGAGCGAAGC GAAATATCGT
TCCCTCTACG ATTCGATGAA GGAGGGGATG GCGCTGCACC GGATCATCTC CGACATGGAG
GGCAATTCCG TCGGCTTCGA GGTGGTCGAC GTAAACCCTT CGTTCGCGTC GATCCTCGGC
ATGGAGAAAT CGGCGATTAT CGGCATGGGG GGCGAAGAGT TTTTCAGCGG TGCGCTTATG
GCCCGTTTTG CCGAGATAGT TCGCGGAGCA GAGAGCGGCG AGGCGCTGAT GTTCGAATTG
CCCCTGCCGG AGAAAAACCT CTTTTTTGAT GTGTCGGTGT TTTATCCGGA TAGCGGTCTG
TTTGCGACCT TGTTCGAGGA TACCACGGAG CGGAAGAAGT CGGACGAACA GATCCAGAGA
CTTGCCTACT ACGACACCCT GACGGCGTTA CCGAATCGAA CCCTCTTCCT CGACCGGTTG
GAACAGGCCC TTGCCGGGGC CATCCGCGAT AACGGCAAGT TTGCCCTTTT CTTCATCGAT
CTCGACGGCT TCAAGGTCAT CAATGACAAC CTGGGACACG CCCAGGGGGA CCTGCTCCTC
ACCATGGTTT CGCAACGGCT GAGGGAAGGC ATCCGCCGCA AGGACACCCT TGCCCGGCTG
GGGGGCGATG AGTTCATGGT GCTGATTTCC TACGCTGGCG AAGAACGCAA TGCCGCACAC
CTCGCCCAGC ACCTTCTGGA GAGGATTTCG CCTCCCTACG AGATCGGCAG CCGTGTCGTT
TACACTTCCG CAAGCATCGG TATTTCCATC TTTCCCGATG ACGGGCGCGA CGCAGAGACG
CTCCTGCGAT GCGCCGACAT GGCCATGTAC GCAGCCAAGG AAGCGGGGCG CAACGGCTAC
CATTTCCATT CGCCGGAAAT GAACCGCAAG GCCCATGAAC GGATGGAACT GGAGATGAGT
CTCCGGCAGG CCCTGGAGCG GGATGAGTTT TTCCTGGAGT TCCAGCCCAT CATCAATGTT
GGCGGAGACT GCCTGGTGGG GGCCGAAGCC CTTGTCCGCT GGCAGCATCC TGCACAGGGG
AGGGTCATGC CGGGAACCTT TATCCCCCTT GCGGAAAGCT CGGGCCTGAT CATTCCCCTG
GGCGAGTGGG TGTTGCGGAA AGCCTGCGAG AAGATGAAGG AGTGGCGCGA TGCCGGACTC
CCGCCCGTCA AGCTGTCGGT CAACATCTCG GGGCGGCAGT TTGAGCAGCG CAACTTCACT
GCGTTGGTCG ATGAAGTTCT GAAGGAAACC GGCGTCGATG CCCGCGCGCT TCAGTTCGAG
CTTACGGAAA CCAGCCTCAT GAAAGATGCC GGAGCCACGG TGAGCGCCCT CTACAAACTC
AAGGAACTGG ATCTGAGGAT CGTGGTCGAC GACTTCGGTA CGGGGTATTC TTCCCTGGCG
TATCTCAAGA ACTTTCCCAT CGATCACATC AAGATCGACC GCTCGTTCGT CATGGATATC
TGCGACGATC CCGACGACCG GTCCATCGTG GAAGCCATTG TCGCCATGGC AAACAAACTC
AACCTCGATG TTGTGGCGGA AGGTGTTGAA ACCCGCGAAC AGCGGGACTT GCTTCTGGAT
CTCGGCTGCC ACGAGATGCA GGGGTTCCTC TTCCACCGCC CGCTGCCCGA AGAAAAGTTC
GTTGAACTGC TGCGGGACGT GAGGCTTTGC ACTCTTCCTG CGGCGCTTTG A
|
|---|
| Protein sequence | MTTLYRSIAR LTTLFAGAIT ITVAVLVPAG YFLVSYQYLL GSLDTQAEVN SRAVTRLVTA
NPEMWRYEEV RLMELLERRS RRDIPEVRRV LDLQGKTIVA SADHLRPPVV SRRYAIYDAG
HAVAQLEISR SLGPLLLETA LVAACALLVG GLGFVMLRTI PLRAVNQAHQ SLAESEAKYR
SLYDSMKEGM ALHRIISDME GNSVGFEVVD VNPSFASILG MEKSAIIGMG GEEFFSGALM
ARFAEIVRGA ESGEALMFEL PLPEKNLFFD VSVFYPDSGL FATLFEDTTE RKKSDEQIQR
LAYYDTLTAL PNRTLFLDRL EQALAGAIRD NGKFALFFID LDGFKVINDN LGHAQGDLLL
TMVSQRLREG IRRKDTLARL GGDEFMVLIS YAGEERNAAH LAQHLLERIS PPYEIGSRVV
YTSASIGISI FPDDGRDAET LLRCADMAMY AAKEAGRNGY HFHSPEMNRK AHERMELEMS
LRQALERDEF FLEFQPIINV GGDCLVGAEA LVRWQHPAQG RVMPGTFIPL AESSGLIIPL
GEWVLRKACE KMKEWRDAGL PPVKLSVNIS GRQFEQRNFT ALVDEVLKET GVDARALQFE
LTETSLMKDA GATVSALYKL KELDLRIVVD DFGTGYSSLA YLKNFPIDHI KIDRSFVMDI
CDDPDDRSIV EAIVAMANKL NLDVVAEGVE TREQRDLLLD LGCHEMQGFL FHRPLPEEKF
VELLRDVRLC TLPAAL
|
|---|
| |