| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gmet_0777 |
|---|
| Symbol | |
|---|
| ID | 3739340 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter metallireducens GS-15 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007517 |
|---|
| Strand | - |
|---|
| Start bp | 853853 |
|---|
| End bp | 856099 |
|---|
| Gene Length | 2247 bp |
|---|
| Protein Length | 748 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637778055 |
|---|
| Product | PAS/PAC sensor signal transduction histidine kinase |
|---|
| Protein accession | YP_383744 |
|---|
| Protein GI | 78221997 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5000] Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 43 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 70 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTTGAAA ACCATCACCA GCAGCCACCC ATCATTTCCC CTCCGGAACA GGAGCGGAAG
AAGCGGCGGC GGGAAGCGAT TATCATCGCC ATCTCCGTCC TGCTGATCCT CGTGCTGACC
CGGGCCGAGA TCCACCTCTC CCGCATCAGC TCCGAAGTCC CCATGGGGAG CAACATCCTC
ATCTTCGGCA TCATCAACAT CATCATTCTC CTCATCATTC TCCTCATCTA CCTGGTTTTC
CGCAATGTGG CCAAGCTCCT CATGGAGCGA CGAAGCAAGG CCATTGGCGC CAATCTCCAG
ACCAAGCTCG TCATCGCCTT CATGGGACTG TCGCTGGTAC CGACCATGCT CCTCTTCGTG
GTGTCGGCCT CCTACGTCAA CATGAGTATC CGCAACTGGT TCAACACCCA GGTCGAGAGC
TCCCTGTCCG AGTCCCTGGA GGTGGCCCAG ACCTACTACA AAAACTCGGC CGCCAACGCC
CTCTATTACG GCCGGCAGAT CAGTTCCATC ATCCGGGACG AGCGGCTCCT GAACGAGGAA
AACCTTCCCC GGCTCCGGGA GCTGGTCCGC CGGAAGCAGC AGGAGTACAA CCTCGGCATC
GTGGAGGTCT ACTCCTCCCA GAACGAAGAG CTGGTCCGGT CGTCGAACCC CGGCGTCCCC
CAGGGGGAAT TCACGAACCC CTCCTCCGAG GACATCAAGA TGGGGCTCAA CGGCAAGGAA
CTGAGTCGCG TCAACACCGT GGGGAAAGCC GACCTGATCC GCGGCATCAT GCCCATCTAC
TCCACCTACC GGGCCGACGA GGTGGTGGGG GTGGTGGTGG TGAACTACGT CGTCCCCTAC
TCCCTCGTGG AGAAGATGCG GGAGATCACC AGCTCCTACG AGGAGTTCCG CCAGCTCAAG
ATCCTCAAGA ACCCCATCCG CTCGGGGTAC ATCCTGACCC TCTTCCTTGT CACCATGGTG
ATCGTCTTCC TGGCGGTCTG GTTCGGCATC TACCTGGCCA ACAGCCTCAC GACCCCCATC
AAGGAGCTGG CCGAGGCGAC CCGCCAGGTG GCCGAGGGAA ACCTGGACGT GCAACTGGGG
CAGCGCTCGA GCGACGAGTT CGGGATGCTC GTGGCCGCCT TCAACAAGAT GACCCTGGAC
CTGCGGAGCC ACCAGCAGGC CCTGCGCCAG ACCAACATCG AGCTCGTCCG GAGCAACCAG
GAGCTGGACG AGCGGCGCCG CAACATGGAG ATCGTGCTGC GCAACGTGGC CGCCGGCGTC
ATCTCCGTGG ACAGTCATGG TGTGATCACC ACCATCAACA AATCGGCGGA GGAGCTCCTG
CAGGTCGCCG CCCGCGACGT GGTGGGGAAG AACTTCCGGG AGGTTCTCAA GCACGAGCAG
ATCGACACCC TCAAGGGTAT CCTGCGCGAC ATGGTGATGG CGAAGCAGGA CACCATCAGC
CGTCAGGTGA CGGTCCCGAT CCGCGACTCC AGGGCGACAC TCCTCTTCAA CCTGACCATG
CTGCGGGACG AAAGCGGCGA GTTCCTGGGA ACGGTGGTGG TCTTCGACGA CCTGACCCAG
CTCATCAAGG CCCAGCGGAT GGCGGCCTGG CGGGAAGTGG CCCGGCGCAT CGCCCACGAG
ATCAAGAACC CCCTGACGCC GATCCAGCTT TCCGCTCAGC GGCTGAGAAA GCGCTATCTC
CCCCGCTTCG GCGACGAAGA CACCGTCTTT GACGAATGCA CCGCCATGAT CGTCAAATCG
GTGGATGAGC TGAAAAACCT CGTGAACGAA TTCTCCAGCT TTGCCCGGAT GCCGGCCGCC
AACCCGGCCC CCAACGACCT GAACGGGATC ATCCGCGAGG CCCTCACCCT CTTCAGCCAG
GGGCACAGGG CCATCTCGTT CGGCTTCCGG GAAGACCGCC GGCTCCCCCA TCTGCAGCTC
GACCGGGATC AGATCAAGCG GGTCTTCATC AACCTCCTGG ACAACGCCGT GGCGGCCGTG
GCCGAAGAGG GGGAGATCGA AATCGAAAGC CGCTTCGATC CCGTCCTGAA GATGGCGGTG
ATCACCGTGG CCGACACGGG ACACGGCATC GCCCCCGAGG ACAAGCCCCG CCTCTTCGAG
CCGTATTTCT CCACCAAGAA GTCCGGGACC GGCCTGGGGC TTGCCATCGT CAGCACCATC
ATCGCCGACC ACAACGGCTT CATCCGCGTG CGGGACAATC TTCCCCACGG GACGAAATTC
ATCATCGAGC TGCCGGTAAC GGCGTAA
|
|---|
| Protein sequence | MVENHHQQPP IISPPEQERK KRRREAIIIA ISVLLILVLT RAEIHLSRIS SEVPMGSNIL
IFGIINIIIL LIILLIYLVF RNVAKLLMER RSKAIGANLQ TKLVIAFMGL SLVPTMLLFV
VSASYVNMSI RNWFNTQVES SLSESLEVAQ TYYKNSAANA LYYGRQISSI IRDERLLNEE
NLPRLRELVR RKQQEYNLGI VEVYSSQNEE LVRSSNPGVP QGEFTNPSSE DIKMGLNGKE
LSRVNTVGKA DLIRGIMPIY STYRADEVVG VVVVNYVVPY SLVEKMREIT SSYEEFRQLK
ILKNPIRSGY ILTLFLVTMV IVFLAVWFGI YLANSLTTPI KELAEATRQV AEGNLDVQLG
QRSSDEFGML VAAFNKMTLD LRSHQQALRQ TNIELVRSNQ ELDERRRNME IVLRNVAAGV
ISVDSHGVIT TINKSAEELL QVAARDVVGK NFREVLKHEQ IDTLKGILRD MVMAKQDTIS
RQVTVPIRDS RATLLFNLTM LRDESGEFLG TVVVFDDLTQ LIKAQRMAAW REVARRIAHE
IKNPLTPIQL SAQRLRKRYL PRFGDEDTVF DECTAMIVKS VDELKNLVNE FSSFARMPAA
NPAPNDLNGI IREALTLFSQ GHRAISFGFR EDRRLPHLQL DRDQIKRVFI NLLDNAVAAV
AEEGEIEIES RFDPVLKMAV ITVADTGHGI APEDKPRLFE PYFSTKKSGT GLGLAIVSTI
IADHNGFIRV RDNLPHGTKF IIELPVTA
|
|---|
| |