| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gmet_0620 |
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| Symbol | |
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| ID | 3739243 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Geobacter metallireducens GS-15 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007517 |
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| Strand | + |
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| Start bp | 691466 |
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| End bp | 695644 |
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| Gene Length | 4179 bp |
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| Protein Length | 1392 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 637777898 |
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| Product | DNA-directed RNA polymerase, subunit beta-prime |
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| Protein accession | YP_383587 |
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| Protein GI | 78221840 |
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| COG category | [K] Transcription |
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| COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
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| TIGRFAM ID | [TIGR02386] DNA-directed RNA polymerase, beta' subunit, predominant form |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 1 |
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| Fosmid unclonability p-value | 2.7637000000000004e-19 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | TTGGAAGATT TTTTCAGCTT TTTCGATAAA CCGAAGGACC CCCTCCACTT CTCGGCGATC
CGCATCTCCG TTTCTTCACC GGAGAAGATT CGGGAGCGTT CGTTCGGCGA GGTAAAGAAA
CCCGAAACCA TCAACTACCG GACCTTCAAG CCGGAGCGTG ATGGTCTGTT CTGCGCGAAA
ATCTTTGGCC CCACCAAGGA CTACGAATGC AACTGCGGCA AGTACAAGCG CATGAAGCAC
CGCGGCATCG TCTGCGAAAA GTGTGGCGTC GAGGTCATCC CCTCAAAGGT TCGTCGTGAG
CGCCTGGGGC ATATCGACCT CGCCACTCCC GTTGCCCACA TCTGGTTCCT CAAGTCGCTT
CCCTCGCGAA TCGGGAACCT GCTTGACATA TCGTTGAAAG ACCTTGAGAA GGTTCTTTAC
TTCGAGGCCT ATGCAGTTAC CGATCCGAAG AACACCGGAA TGGCCATGGC CGAGGTTCTC
TCCGAAGACC GTTACCTGAA GGCCCTTGAG GAGCACAATT ACCAGTTCGA GGCAGGTATG
GGGGCAGCAG CCATCCGTGA CTGCCTCAAG GCCATCGATC TGGATCAGCT TGCCGAACAA
CTCCGCCAAG AGATGATCGA AGCAACGAGC GAGGCGAAGC GTAAGAAGAC CGCCAAGCGG
CTCAAGGTTG TGGAGGCCTT CAAGGAGTCC GGCAACCGTC CCGAGTGGAT GATCCTTGAG
TGCATCCCGG TCCTTCCGCC CGAGTTGCGT CCCCTGGTCC CCCTCGACGG CGGACGCTTT
GCGACGAGCG ATCTCAACGA CCTCTATCGT CGCGTAATCA ACCGGAACAA CCGCCTCAAG
CGCCTCATGG AACTACAGGC CCCCGAGGTT ATCATACGCA ACGAGAAGCG GATGCTGCAG
GAAGCCGTTG ACGCCCTCTT TGACAACGGT CGCCGCGGCC GTGCCATTGC AGGCCCTAAC
AAGCGCCCCC TCAAGTCCCT CTCCGACATG CTCAAGGGAA AATCAGGCCG TTTCCGCCAG
AACCTCCTCG GCAAGCGGGT CGACTACTCT GGCCGTTCCG TTATTGTTGT GGGACCGGAG
CTTCGCCTCC ACCAGTGCGG TCTCCCCAAG AAGATGGCCC TGGAGCTCTT CAAGCCGTTC
ATCTACAACA AGCTTGAGGA GCGGGGCTTC GTCACCACCA TCAAGAGCGC CAAGAAGATG
GTGGAGAAGG AGCGTCCGGA GGTCTGGGAC GTTCTTGAAG AGGTTATCAA AGAACATCCC
GTTATGCTCA ACCGTGCCCC TACTCTGCAC CGCCTCGGCA TCCAGGCCTT TGAGCCGGTG
CTGATCGAAG GAAAGGCCAT CCAGCTCCAC CCCCTCGTGT GTACCGCCTT TAACGCGGAC
TTCGACGGCG ACCAGATGGC GGTCCACCTT CCTCTTTCTA TCGAGAGCCA GGTGGAGGCG
CGGGTGCTCA TGATGAGTAC CAATAACATC CTGTCTCCGG CGCATGGCAA GCCGATCATC
GTACCGTCGC AGGATATGGT TCTCGGTATC TACTACATGA CCCGGGAGCG TCATTTCGCC
AAGGGGGACG GGAAAATCTT CGCGTCTCCG GAAGAAGTGC GGATAGCGTA TGATGCCGGC
GAGGTTGACC TCCAGGCACG TATCAGCGTC CGGATGAAAA ACATTCTCTC CGCTGCGTCT
GAACAGCCGG CCATCATCGA GACGACAGTT GGTCGTATCT TGCTTCGTGA GATACTCCCC
GAAATGGTCC CCTTCTCTTC CATCAACAAG GTTATGAGCA AGAAGGAGCT TGTGAACCTG
ATCGATGTCT GCTACCGCCT TGCCGGCAAC AAAGAGACCG TCATCCTGGC CGACCGGCTC
AAGGAGACCG GATTCCGCTA CTCGACCCTG GCGGGTATTT CCATCTGCAT GAATGATATG
GTGATCCCCG AAGGGAAGTC CGCAATCATC GACAGCGCCA ACGACGAGGT GAAGGAGATC
CAGAACCAGT ATACCGAGGG TCTCATCACC GACGGGGAGC GCTACAACAA AGTTATCGAC
ATCTGGGCCA AGGCTACGGA AGACATCGCC AAGCAGATGC TCGACAACCT TTCCAAGGAC
ACGATCCTCT CCCCTGACGG CCAGGAAGTG AAGATTCCTT CCTTCAACGC AATTCACATG
ATGGCCGACT CGGGCGCGCG GGGCTCTGCT CAGCAGATTC GTCAGCTGGC GGGTATGCGG
GGGCTCATGG CGAAGCCGTC CGGCGAAATC ATCGAGACTC CTATCACCGC CAACTTCCGG
GAGGGACTGA ACGTTCTTCA GTACTTCATC TCGACCCACG GTGCCCGGAA GGGTCTTGCC
GACACGGCTC TCAAGACCGC GAACTCCGGT TACCTTACCC GTCGTCTGGT TGACGTGGCA
CAGGACGCCA TTATCACCGA GACGGACTGC GGCACGCTCG ACGGCCTTAC CGTCACATCC
CTGACCGAGG GTGGCGAAGT CATTGAGCAG ATTGGAGATC GCATTCTCGG CCGCGTTGCC
CTTGACGATA TCCTTGATCC GGTAACTGGC GATGTGCTTG TTCCTGCCAA CCAGGAAATC
GATGAAACGC TCGTGAAGCG CATCGAGGAT GCTGGCATCG AGCGGGTCAA GATCCGCTCC
GTGCTCACCT GCCAGAGCAG ACGCGGCATT TGCGCCAAGT GCTACGGACG TGACCTTGCC
CGCGGACATA TCGTCAATAT GGGGGAAGCG GTTGGCGTCA TCGCTGCCCA GTCCATCGGC
GAGCCGGGTA CTCAGCTGAC CATGCGTACC TTCCATATCG GTGGTACGGC ATCGCGGCAT
GCAGAGCAGA CCTCGCTTGA AGCCCGGACA GAAGGCCGGG TTAAGTTCAT CAATATAAAC
AGCGTCGTCA ATATTGAGGG ACACCATATC GTCATGAACC GCAACGGCGA AGTTGCCATC
ATCGACGAAA CGGGTCGTGA GCGCGAAAAG TACGGCATTG TCTACGGCGC CAAGATCAAG
TTCGGCCCTG ATCAGGTTGT GAAACCAGGC GAAACGCTCG CCGAGTGGGA CCCTTACACC
ATGCCGATCC TCACCGAGGT CGCTGGACGC GTTAAGTTCG GGGACATTGT TGAAGGGGTA
ACCATGGAGG AACAACTCGA CGAGGTGACC GGCCTTTCCC GTAAGGTTAT CATTGAGTCG
AGGGATGCTG ACAAGCGGCC GCGTATCGCC ATAAAGGCAT CGGATCCCGA ATCCGCGTCC
GGCGGGAGCA CCATCGGTCG TTACTATCTG CCGGTCGGTG CCAACATTTC CGTGGCCGAA
GACTCGTTCG TCAATGCCGG TGATGTAATT GCGAAGATTC CGCGTGAAAC GACGAAGACC
AAAGATATCA CCGGTGGTCT CCCGCGGGTT GCCGAGCTCT TCGAAGCTCG CAAGCCTAAG
GACTTCGCCG TGATAACCGA GATTGACGGT GTCGTCACCT TCGGCAAGGA TGCCAAGGGG
AAGCGCAAGG TCATTGTTAC TCCGGAGTTG GGTGAACCCA AAGAGTATCT GATCCCCAAG
GGCAAGCATA TCAGTGTACA TGAGAACGAT TACGTACGGG CAGGCGAACC CCTCATGGAC
GGGTCCTCCA ACCCCCACGA CATTCTTCGG GTGTTGGGTA TCAAGGAACT CGCAAAGTAC
TTGGTCGACG AGGTTCAGGA GGTTTACCGA CTCCAGGGCG TCAAGATCAA TGATAAGCAC
ATTGAGACCA TTGTTCGTCA GATGCTCCGC AGGGTTCGGA TCAAGGAAGT GGGGGATACT
AACTTGCTCA TTGATGACCA ACTCGAGCGC TGGGTCTTCG AGGAAGAGAA CGAGCGGGTT
ATTGCAAAGG GGGGGCGTCC CGCCATTGCC GAACCGCTTC TTCTTGGTAT CACCAAGGCA
TCGCTCTCGA CGGAATCATT CATCTCTGCT GCATCTTTCC AAGAGACGAC AAAGGTGCTG
ACCCAGGCGG CCATCGAGGG AAAGGTGGAT CAGCTTCGCG GGCTCAAGGA AAACGTCATT
ATGGGACGGC TTATTCCTGC TGGAACAGGT CTGTCTCGTT ATCGGAACCT CAAGCTCGTC
GCCGAGCAGG CAGAACTGTT GGAACCCGTT GCCGTTGCGC CTCCCGCTGT TGAGGAGGAT
TACCCTGAAG ATGACATGCT TGACGATATT GAGGAATAG
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| Protein sequence | MEDFFSFFDK PKDPLHFSAI RISVSSPEKI RERSFGEVKK PETINYRTFK PERDGLFCAK
IFGPTKDYEC NCGKYKRMKH RGIVCEKCGV EVIPSKVRRE RLGHIDLATP VAHIWFLKSL
PSRIGNLLDI SLKDLEKVLY FEAYAVTDPK NTGMAMAEVL SEDRYLKALE EHNYQFEAGM
GAAAIRDCLK AIDLDQLAEQ LRQEMIEATS EAKRKKTAKR LKVVEAFKES GNRPEWMILE
CIPVLPPELR PLVPLDGGRF ATSDLNDLYR RVINRNNRLK RLMELQAPEV IIRNEKRMLQ
EAVDALFDNG RRGRAIAGPN KRPLKSLSDM LKGKSGRFRQ NLLGKRVDYS GRSVIVVGPE
LRLHQCGLPK KMALELFKPF IYNKLEERGF VTTIKSAKKM VEKERPEVWD VLEEVIKEHP
VMLNRAPTLH RLGIQAFEPV LIEGKAIQLH PLVCTAFNAD FDGDQMAVHL PLSIESQVEA
RVLMMSTNNI LSPAHGKPII VPSQDMVLGI YYMTRERHFA KGDGKIFASP EEVRIAYDAG
EVDLQARISV RMKNILSAAS EQPAIIETTV GRILLREILP EMVPFSSINK VMSKKELVNL
IDVCYRLAGN KETVILADRL KETGFRYSTL AGISICMNDM VIPEGKSAII DSANDEVKEI
QNQYTEGLIT DGERYNKVID IWAKATEDIA KQMLDNLSKD TILSPDGQEV KIPSFNAIHM
MADSGARGSA QQIRQLAGMR GLMAKPSGEI IETPITANFR EGLNVLQYFI STHGARKGLA
DTALKTANSG YLTRRLVDVA QDAIITETDC GTLDGLTVTS LTEGGEVIEQ IGDRILGRVA
LDDILDPVTG DVLVPANQEI DETLVKRIED AGIERVKIRS VLTCQSRRGI CAKCYGRDLA
RGHIVNMGEA VGVIAAQSIG EPGTQLTMRT FHIGGTASRH AEQTSLEART EGRVKFININ
SVVNIEGHHI VMNRNGEVAI IDETGREREK YGIVYGAKIK FGPDQVVKPG ETLAEWDPYT
MPILTEVAGR VKFGDIVEGV TMEEQLDEVT GLSRKVIIES RDADKRPRIA IKASDPESAS
GGSTIGRYYL PVGANISVAE DSFVNAGDVI AKIPRETTKT KDITGGLPRV AELFEARKPK
DFAVITEIDG VVTFGKDAKG KRKVIVTPEL GEPKEYLIPK GKHISVHEND YVRAGEPLMD
GSSNPHDILR VLGIKELAKY LVDEVQEVYR LQGVKINDKH IETIVRQMLR RVRIKEVGDT
NLLIDDQLER WVFEEENERV IAKGGRPAIA EPLLLGITKA SLSTESFISA ASFQETTKVL
TQAAIEGKVD QLRGLKENVI MGRLIPAGTG LSRYRNLKLV AEQAELLEPV AVAPPAVEED
YPEDDMLDDI EE
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