| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gmet_0088 |
|---|
| Symbol | |
|---|
| ID | 3739414 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter metallireducens GS-15 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007517 |
|---|
| Strand | + |
|---|
| Start bp | 110601 |
|---|
| End bp | 112076 |
|---|
| Gene Length | 1476 bp |
|---|
| Protein Length | 491 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 637777366 |
|---|
| Product | sigma-54 factor, interaction region |
|---|
| Protein accession | YP_383062 |
|---|
| Protein GI | 78221315 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.00217013 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 0.0000044852 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGCTA TCGAGACAAT ACTGGCGACG GAGCGGGATT TTTTTGCCAA GGTGGCCCGG
GCCGCCTTCC TCAATCCCTT TGGCGAGAGC CGCGACGAAC TGGACCTGCT CCTGGCGGGA
ACTGGTGCCG GTGACCGGGG CGGAGTGCTT GCCGCCATCA TTGCCCGGGT GGCCGAACGG
ACGGCCGTCC TGCAGCGGGA ACTGCGGGGC AACCACCACC GCCTGCCGGC TGCCGACCGG
GAAACGGTCC GGACTGTGCT CCTCTTCGAT CTCTTTCATC GGTTCCTGGA CTCCTTCGAC
CGCCTGATCC GGGAGCAGGC CGTCGGCGGC GACTCCCCCT GCCCCGTCCC CTTTGCCGGC
GGCTTCCAGG CCGCCTTCGC GGAGGCGGGC TTCTCCGAGA CGGAAAGCCG CCGCTACCTG
GGCCTCTTCT ACCAGCTCCG GCGGGCCTTC TACTTCATCC GGGAAGGGCT CGCCGGTTCC
AGCCCGTCGC TGCGCCGGGT GCGGGAACAC CTCTGGCAGA CCCTCTTCAC CCACAACATC
CGGTGGTTCG ACCAGTACCT CTGGGACCGG ATGGAGGACT TCTCCGTACT CATCCTCGGG
GAGACCGGCA CCGGCAAGGG GGCCGCAGCC GCGGCCATCG GCCGGTCGGG CTTCATCCCC
TTCGACCCGA AAACCGGCCG GTTCAGCGAA AGCTTCACCC GCAACTTCCT GGCGGTGAAC
CTCTCCCAGT ACCCGGAGGG GGTCCTGGAG TCGGAGCTCT TCGGCCACCG GAAGGGGGCC
TTCACCGGCG CCATCGATCA CCATGAGGGG GTCTTCAGCC GCTGCACCCC CCACGGCGCC
ATCTTCCTGG ACGAGATCGG CGAGGTGCCG CTGCCGGTGC AGGTGAAGCT CCTCCAGGTG
CTCCAGGAGC GGAGCTTCTC GCCGGTGGGG AGCCACCAGC GGCTCCGCTT CAGCGGCCGG
GTCATCGCCG CCACCAACCG GGACCTGACC CGCCTGCGGG AGCAGGGGGA GTTCCGGGAC
GACTTCTACT ACCGCCTCTG TTCCGACGTC ATCACCATCC CACCCCTGCG GCAGCGGCTC
CAGGAATGCC CCGACGAGCT GGGGGAGCTG GTGGCGGGAA TCCTCACGCG CCTGACCGGG
ACCGCGCCGA AGCGGGAGGT GCAGCTATTG CGCAAGGCCA TCGAACGGGA AACGGGAAAG
GGATACCACT GGCCGGGAAA CGTGCGGGAG CTGGAGCAGG CGGTGCGGCG GGTACTGGTG
ACGGGACATT ACCGGGGGGA AGAGAAAGGG GCGCCGTCCG GCGTGACGGA GCAGTTCCTG
GCGGACGTGG CGGCGGGGGG GCTCGATGCC CAGGGGCTTC TGGCCGGCTA CTGCCGCATC
CTGTACGAGC GGCACGACAC CTACGAGGAG GTGGCCCGCC GGGCCAACCT GGACCGGCGG
ACGGTGAAGA AGTATCTGCA GCAAGCAGGG GAGTGA
|
|---|
| Protein sequence | MKAIETILAT ERDFFAKVAR AAFLNPFGES RDELDLLLAG TGAGDRGGVL AAIIARVAER
TAVLQRELRG NHHRLPAADR ETVRTVLLFD LFHRFLDSFD RLIREQAVGG DSPCPVPFAG
GFQAAFAEAG FSETESRRYL GLFYQLRRAF YFIREGLAGS SPSLRRVREH LWQTLFTHNI
RWFDQYLWDR MEDFSVLILG ETGTGKGAAA AAIGRSGFIP FDPKTGRFSE SFTRNFLAVN
LSQYPEGVLE SELFGHRKGA FTGAIDHHEG VFSRCTPHGA IFLDEIGEVP LPVQVKLLQV
LQERSFSPVG SHQRLRFSGR VIAATNRDLT RLREQGEFRD DFYYRLCSDV ITIPPLRQRL
QECPDELGEL VAGILTRLTG TAPKREVQLL RKAIERETGK GYHWPGNVRE LEQAVRRVLV
TGHYRGEEKG APSGVTEQFL ADVAAGGLDA QGLLAGYCRI LYERHDTYEE VARRANLDRR
TVKKYLQQAG E
|
|---|
| |