| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gmet_0055 |
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| Symbol | |
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| ID | 3738543 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Geobacter metallireducens GS-15 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007517 |
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| Strand | + |
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| Start bp | 67895 |
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| End bp | 70165 |
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| Gene Length | 2271 bp |
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| Protein Length | 756 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637777333 |
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| Product | sigma-54 dependent trancsriptional regulator |
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| Protein accession | YP_383029 |
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| Protein GI | 78221282 |
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| COG category | [C] Energy production and conversion
[K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG2221] Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits
[COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 49 |
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| Fosmid unclonability p-value | 0.928801 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAACCGA TCATTACCGT AAAAGAGAAG TGCCGTAAAT GCTACTGCTG TGTCCGGAGT
TGCCCGGTCA AGGCGATCAA GGTGGCCAAG AGCTACACCG AGATCATCGT CGACCGGTGC
ATCGGCTGCG GCAACTGTCT CAGCAACTGC CCCCAGCAGG CAAAGATGGT GGCCGACAAG
GTGGGGGTGA CCGAAAAGCT CCTCTCCTCG GGGGAGGAAG TTATCGCCGT GCTCGGATCC
TCTTTTCCCG CCTTTTTCCA CAATGTTACC CCCGGTCAGT TGGTGGCGGG CCTCAGGAAG
ATCGGCTTTG CCGAGGTCCA CGAAGGATCC TATGGGGCCG AACTGATTGC CGACGATTAT
GCCCGAATCA CGTCGGAAAA GGGACACCCC CGTATCTCGT CCCACTGCCC TGCCATCGTC
GATCTCATCG AGCGCCACTA CCCGAAGCTC GTGGGGAACC TCGTGCCGGT GGTGTCCCCC
ATGGTGGCCA TGGGGCGGTA TCTCAAGGGG ACCCTGGGGC AGCACGTGAG GGTTGTCTAC
ATAAGCTCCT GCGTTGCCAA CAAGCTGGAA ACGCAGACCC AGGAGACCCG CGGCGCCGTT
GACATCGTTC TGACCTACCG GGAACTGGAG GGTATCTTCC GGAGCCGCCA GATAGCCCTG
CCGGCCCTTG CCGACGAGCC CCTCGACGGA ATCAGGCCGG GGGCCGGCCG GCTTTTTCCC
ATTGCCGACG GGACGTTCCG GGCCTTCGGC ATCCCTTTTG ATCCCCTGGA CACCGAGATC
GTCGCCGCCT GTGGCGAGGT GAACGTCATG GGTATCATCA ATGACCTGGC AGCTGGCCGC
ATCTCCCCCC GGATCGCCGA CCTCCGTTTC TGCTACGACG GCTGCATCGG CGGCCCCGGC
AGAAACCGGG CGCTTACGGA GTTTTACCGC CGCAACCGGG TGATTGCCCA CTTCAAGCAG
GAGGTCCCCT GCCGGACGGT CCCCAATTCC CTCCTTGAGG CAGGGCGGGT CTCCTTTGGC
CGCAGCTTCG CCAGCAAGTA CGCGAAACTG GAGGCCCCCA AGGCGAACGA CGTCCGCAAG
ATCCTCAACG CCACCAACAA GTTCACGGTG AAGGACGAGC TCAACTGCCG GGCCTGCGGT
TACCGCACCT GCCGCGAGTA CGCTGTGGCA GTCTTTCAGG GGCTCGCGGA GATTGAGATG
TGCCTCCCTT ACAACCTCCA GCAACTGGAG GAGGACCGGG GGCGCCTCAT TCAGAAGTAC
GAGTTGGCGC GGCGGGAACT GGAACGGGAG TACGGGGACG AGTTCATCGT GGGCAACGAC
CGCAAGACCC TGGATGTGCT CGGCCTCATC AAACAGGTGG GACCCACCCC CACAACGGTT
CTCATTCGGG GGGAGTCAGG TACCGGCAAG GAGCTCACCG CCCGGGCGAT CCACCGCTAC
AGCAAGCGCA ACGACAAACC GCTGGTTACC GTCAACTGCA CCACTATCAC CGACTCTCTC
CTGGAGAGCG AACTCTTTGG CCACAAGCGG GGAGCCTTCA CCGGTGCCGT TGCCGACAAG
AAAGGGCTCT TTGAGGCCGC CGACGGGGGG ACGATCTTCC TCGATGAGAT CGGCGACATA
ACCCCCAAGC TCCAGGCGGA GCTCTTGCGG GTTCTCGATA TGGGGGAGGT GCGCCCCGTG
GGGGGGACTG CAGCAAAAAA GGTGGATGTG CGCCTCATTG CCGCCACCAA CAAGAACCTG
GAACAGGGGG TCCGCGAGGG GTGGTTCCGG GAGGATCTCT ATTACCGGCT CAACGTCTTC
ACCATTACCA TGCCCCCCCT GCGAAGCCGC GTCGAGTCGA TTCCCATTCT GGTCCACCAC
TTTATGGACA AGGCAAGCAC CAAGCTCAAC AAGCGGATGG TCGGCATCGA GGACCGTGCC
GTCAAGGCGC TCACAAAGTA CCCGTGGCCC GGCAATATCC GTGAGATGCA GAACGTCATC
GAGCGGGCTG CCGTTCTCAC CCATGACGGC GTGATCCGGG TCGAGAACTT TCCCCTTGCC
CTCTCTGAGG GGCTTGAGGA GGGGTTCGCC ACGGGGCTCG ACATCCACGC AGCATCGTTT
CGGTCCGAGC GGGAGCAACA TATGGGGAAG CTGGAGAAAA AGCTTATACA GCGCTACCTG
ACGGAGGCCA ACGGCAATAT TTCGCGGGCG GCGAAGCTGG CAAACATCCC CCGGCGGACC
TTTTATCGGC TTCTCGATAA GTACCGCCTC AGGGAACGGG ATGTTCGCTA A
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| Protein sequence | MEPIITVKEK CRKCYCCVRS CPVKAIKVAK SYTEIIVDRC IGCGNCLSNC PQQAKMVADK
VGVTEKLLSS GEEVIAVLGS SFPAFFHNVT PGQLVAGLRK IGFAEVHEGS YGAELIADDY
ARITSEKGHP RISSHCPAIV DLIERHYPKL VGNLVPVVSP MVAMGRYLKG TLGQHVRVVY
ISSCVANKLE TQTQETRGAV DIVLTYRELE GIFRSRQIAL PALADEPLDG IRPGAGRLFP
IADGTFRAFG IPFDPLDTEI VAACGEVNVM GIINDLAAGR ISPRIADLRF CYDGCIGGPG
RNRALTEFYR RNRVIAHFKQ EVPCRTVPNS LLEAGRVSFG RSFASKYAKL EAPKANDVRK
ILNATNKFTV KDELNCRACG YRTCREYAVA VFQGLAEIEM CLPYNLQQLE EDRGRLIQKY
ELARRELERE YGDEFIVGND RKTLDVLGLI KQVGPTPTTV LIRGESGTGK ELTARAIHRY
SKRNDKPLVT VNCTTITDSL LESELFGHKR GAFTGAVADK KGLFEAADGG TIFLDEIGDI
TPKLQAELLR VLDMGEVRPV GGTAAKKVDV RLIAATNKNL EQGVREGWFR EDLYYRLNVF
TITMPPLRSR VESIPILVHH FMDKASTKLN KRMVGIEDRA VKALTKYPWP GNIREMQNVI
ERAAVLTHDG VIRVENFPLA LSEGLEEGFA TGLDIHAASF RSEREQHMGK LEKKLIQRYL
TEANGNISRA AKLANIPRRT FYRLLDKYRL RERDVR
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