| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Syncc9605_2552 |
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| Symbol | ligA |
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| ID | 3737967 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Synechococcus sp. CC9605 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007516 |
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| Strand | + |
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| Start bp | 2367605 |
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| End bp | 2369647 |
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| Gene Length | 2043 bp |
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| Protein Length | 680 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637777137 |
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| Product | NAD-dependent DNA ligase LigA |
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| Protein accession | YP_382835 |
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| Protein GI | 78214056 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
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| TIGRFAM ID | [TIGR00575] DNA ligase, NAD-dependent |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTGATC CGCACGAGCG GGCCGCGGAA CTGCGGCACC TGCTCAACCG TGCCGGCCAC
GCTTATTACG TTCTCGATGC ACCCGAAATG GAGGACACGG TCTACGACCG CCTCTATCGC
GAGCTGCTCG AGCTGGAACA GAACGATCCG GGCCTGCAAC GGCCCGACAG TCCCACCCAG
CGGGTGGGCG GAGCTCCGGC GGAAGGGTTC ACCAGCGTTG AGCACCGTGT GGGCATGCTC
AGCCTCGACA ACGCCTTCAA CCGCGACGAC CTGCGGGCCT GGCACGAGCG GCTGCTCAAG
GTGCTGGACC GTCCCAGCGA CAGCCGCCTG CCCCTGGTGG GGGAACTCAA AATCGACGGC
AACGCCCTCG CCCTGAGCTA CCGCAACGGG GTGTTGGAAC GGGCCGCCAC CCGGGGCGAC
GGCAGCCGCG GTGAAGAGAT CACCGCCAAC GTGCGCACGA TCAGCTCGAT TCCGCTGCGG
CTGCAGATCG AGAACCCACC CGAATGGGTG GAGGTGCGAG GAGAGGCGTT CATCCCCGAT
GCCACCTTCG CGGCGATCAA TGCCGAAAGG GAGCAACGGG ATGAAGCGCT GTTCGCCAAT
CCCCGCAACG CCTGCGCCGG AACCCTGCGC CAACTGGATC CCAAGGTGGT GGCCGCCCGC
CGGCTCGACT TCTTTGCCTA CACCCTGCAC CTGCCGGGTG ACGCCCAACC CCCCGGCCAA
TGGGCAGCTC TGGAGTGGCT GAACTCGGCG GGTTTCCGCG TGAACCCGAA CCGGGAGCTC
TGCGGAGACC TGGCCGCCAT CCAGCGCTTC TGCGACCACT GGGAGCAGGG TCGCCATGAC
CTCCCCTATG CCACCGATGG CGTGGTGGTG AAGCTGGACG ACCTGCAGCT GCAGGACGAA
GCCGGCTTCA CCCAGAAGGC GCCGCGCTGG GCCGTCGCCC TCAAATACCC GGCCGAAGAA
GCCCCCACCC GTCTGCTTCG CGTTGGCGCT CAGGTGGGCC GCACCGGTGC CATCACCCCC
GTGGCCGAAT TCGAAGCGGT GCCCCTGGCC GGCACCAGCG TCAGCCGCGC CACCCTCCAC
AACGCCGATC GGATCGCTGA ACTGGATCTG CACCTGGGCG ACACCATTGT GGTGCGCAAA
GCCGGGGAGA TCATTCCCGA AGTGGTGCGG GTGCTGCCGG AGCTCAGGCC CAGCGACGCC
ACTCCGGTGC AACTGCCACA GCAATGCCCC GAATGCGGCT CCAACCTGGT GCGGGAAGGC
GATGAAGCCG CCACCCGTTG TGTGAACAGC AGCTGCCCGG CGATCCTGAG AGGTGGCCTG
CGGCACTGGG TGAGCAAGGG CGCCCTGGAT GTGGATGGGC TCGGCAGCAA GTTGATCGAA
CAACTGGTGG ATCGCGGCCT GGTGGGTTCG CTGGCGGATC TTTACCGCCT GGATGCAGCC
CTGCTCGCCA GCCTGGATCG AATGGGCGAT AAGTCGGCCA CCAACCTGGT GGAGGCCCTT
AAGGCCTCCA AACAACAGCC GTGGCACCGC CAGCTTTATG GCCTCGGCAT CCGCCACATC
GGCGAGGTCA ACGCCAAAGC ACTCGCGGCC GCTTTCTTCA GCATCGACAG CCTGGCGACA
GCAGCGCTGG AGGCCCCGGA GCAGATCGCC GAACTGCATG GCATCGGCCC GGAAATCAGC
GCCAGCCTGG GCCAATGGCT GCACACCCCC GCCAACCAAC AGCTGCTGCA GGACTTACGC
AGCGTTGGCT TCTCCCTGGA GGCCAGTACC TCCGAGCAGG AGGCCGCCAG CCAAGCCGGA
GCTGACGCCG ACGGCGTGCT GCAGGGCAAA ACCCTGGTGC TCACGGGCAC ACTCCCCAAC
CTCAGCCGCA GCGAGGCCAA AGCGCTGATC GAAACGGCCG GCGGCAAGGT GAGCGGCAGC
GTCAGCAAGA AGACCGACTA CCTGGTGGCG GGCGAAGCCG CCGGCAGCAA ACTGACCAAA
GCCGAAAGCC TCGGGGTAAC GGTGCTCAGC GAAGCCGATC TCACCGCCCT GCTGCAGCCA
TGA
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| Protein sequence | MADPHERAAE LRHLLNRAGH AYYVLDAPEM EDTVYDRLYR ELLELEQNDP GLQRPDSPTQ
RVGGAPAEGF TSVEHRVGML SLDNAFNRDD LRAWHERLLK VLDRPSDSRL PLVGELKIDG
NALALSYRNG VLERAATRGD GSRGEEITAN VRTISSIPLR LQIENPPEWV EVRGEAFIPD
ATFAAINAER EQRDEALFAN PRNACAGTLR QLDPKVVAAR RLDFFAYTLH LPGDAQPPGQ
WAALEWLNSA GFRVNPNREL CGDLAAIQRF CDHWEQGRHD LPYATDGVVV KLDDLQLQDE
AGFTQKAPRW AVALKYPAEE APTRLLRVGA QVGRTGAITP VAEFEAVPLA GTSVSRATLH
NADRIAELDL HLGDTIVVRK AGEIIPEVVR VLPELRPSDA TPVQLPQQCP ECGSNLVREG
DEAATRCVNS SCPAILRGGL RHWVSKGALD VDGLGSKLIE QLVDRGLVGS LADLYRLDAA
LLASLDRMGD KSATNLVEAL KASKQQPWHR QLYGLGIRHI GEVNAKALAA AFFSIDSLAT
AALEAPEQIA ELHGIGPEIS ASLGQWLHTP ANQQLLQDLR SVGFSLEAST SEQEAASQAG
ADADGVLQGK TLVLTGTLPN LSRSEAKALI ETAGGKVSGS VSKKTDYLVA GEAAGSKLTK
AESLGVTVLS EADLTALLQP
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