| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Syncc9605_1430 |
|---|
| Symbol | |
|---|
| ID | 3735967 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Synechococcus sp. CC9605 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007516 |
|---|
| Strand | - |
|---|
| Start bp | 1342187 |
|---|
| End bp | 1344118 |
|---|
| Gene Length | 1932 bp |
|---|
| Protein Length | 643 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637776023 |
|---|
| Product | 1-deoxy-D-xylulose-5-phosphate synthase |
|---|
| Protein accession | YP_381739 |
|---|
| Protein GI | 78212960 |
|---|
| COG category | [H] Coenzyme transport and metabolism
[I] Lipid transport and metabolism |
|---|
| COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
|---|
| TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.0817623 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCATCTCG GAGATCTGAA GCATCCGAAT GAACTGCACG GACTCAGCCC GGCTCAGCTC
GAGGACGTGG CTCGGCAGAT TCGTGAGCGG CATCTGCAGG TGGTGTCCAC AAGCGGTGGT
CACCTAGGGC CTGGCCTGGG GGTTGTCGAG CTGACCCTTG CGTTGTACCA AACGCTGGAT
CTCGACCAGG ACCGTGTGAT CTGGGATGTG GGCCATCAGG CTTACCCCCA CAAATTGATC
ACCGGCCGGT TCAACGATTT CGACTCTCTG CGTCAGCAAC ACGGGGTAGC GGGGTACCTC
AAGCGCACTG AGAGCGACTT CGACCACTTC GGAGCGGGCC ACGCCAGCAC CTCCATCTCA
GCGGCGCTGG GCATGGCCAT GGCGCGAGAT AACCATGGTG AATCGTTCAA GTGTGTTGCC
GTCATCGGTG ATGGAGCCCT GACAGGCGGC ATGGCTCTGG AGGCCATCAA CCATGCCGGA
CACCTCCCGA ATACACGGCT CTTGGTGGTG CTGAACGACA ACGACATGTC GATTTCCCCG
CCGGTGGGGG CCTTGTCGAA CGTGCTGAAC CGTGCGCGGC TCAGCCCGCC GATGCAGTTC
CTCTCAGGGA GTGTTGAGGA GAGCGTTCGG CACCTGCCGT TCATGGGTGG CGAGATTCCT
GCGGAACTCA ACCGTCTCAA GGGCAGCATG CGTCGCCTCG CGGTACCCAA GGTGGGTGCC
GTGTTCGAGG AACTGGGCTT CACCTACATG GGGCCGATCG ATGGCCATGA CATCGGTGAA
ATGGTGCGCA CCTTCCAGGC GGCCCATCGA GAAGGCGGCC CGGTGCTGGT GCATGTGGTC
ACCAAAAAGG GCAAGGGCTA TCCCTATGCC GAGGCCGATC AGGTCGGTTA TCACGCCCAA
TCGGCCTTTG ATCTCGGCAC CGGCAAGGCA ATCCCGTCAT CGAAACCCAA ACCTCCCAGC
TACAGCAAGG TGTTTGGGCA GACCCTGGTC AAGCTCTGTG AGCAGAACAG TCGGGTGATC
GGCATCACTG CGGCCATGGC CACCGGTACC GGTCTCGACC TGCTTCAGAA GGCTGTTCCG
GACCAGTACG TGGACGTCGG CATTGCTGAG CAGCATGCCG TCACCCTGGC GGCGGGCATG
GCCTGCGAGG GGTTGCGCCC CGTCGTTGCC ATCTACAGCA CCTTCCTGCA GCGCGCCTAC
GACCAGTTGA TCCACGATGT GGGCATCCAG AAGCTGCCGG TCACCTTCGT GCTTGATCGC
GCCGGCATCG TTGGTGCTGA CGGTCCGACC CACCAGGGTC AGTACGACAT CAGCTACATG
CGGGCCATTC CCAACTTCAC AGTGATGGCA CCGAAGGATG AAGCTGAGCT GCAGCGGATG
CTGGTGACCT GCCTGCAGCA CGACGGGCCC ACGGCGTTGC GAATTCCCCG GGGCTCCGGG
GAAGGCGTGC CGTTAATGGA AGAGGGTTGG GAAACGCTGC CGATCGGCCG CGGTGAACTG
CTGCGGGAAG GCGACGATCT GATGATCGTG GCTTACGGCT CGATGGTGGC GCCGGCCCTT
GCGACTGCAA CGCTGCTCGA GGAAGCCGGG CTCTCCACCA CTGTGATCAA CGCCCGCTTC
CTGAGGCCCC TGGATCAAGC GCTGATCCAT CCCCTGGCGC GGCGCATCCC CCGTGTCGTC
ACCATGGAGG AGGGAGCTCT TCCGGGTGGT TTTGGTGCAG CGGTTCTGGA GTCACTGACT
GATCAGGACA TCAACGTGTC GATGCTGCGC ATTGGCATCC CTGACAAGCT GGTCGATCAC
GCCACGCCGC AGCAGAGCAA GGAGGCTCTC GGCCTGACTC CTGCGCAGAT GGCTGAACGA
ATCCTTGAGC GCTTCAGCAA CACCTCGGGT GATCTGCCAG CCAGCGCTTC GATCAAGGCC
CTGCAGGCCT GA
|
|---|
| Protein sequence | MHLGDLKHPN ELHGLSPAQL EDVARQIRER HLQVVSTSGG HLGPGLGVVE LTLALYQTLD
LDQDRVIWDV GHQAYPHKLI TGRFNDFDSL RQQHGVAGYL KRTESDFDHF GAGHASTSIS
AALGMAMARD NHGESFKCVA VIGDGALTGG MALEAINHAG HLPNTRLLVV LNDNDMSISP
PVGALSNVLN RARLSPPMQF LSGSVEESVR HLPFMGGEIP AELNRLKGSM RRLAVPKVGA
VFEELGFTYM GPIDGHDIGE MVRTFQAAHR EGGPVLVHVV TKKGKGYPYA EADQVGYHAQ
SAFDLGTGKA IPSSKPKPPS YSKVFGQTLV KLCEQNSRVI GITAAMATGT GLDLLQKAVP
DQYVDVGIAE QHAVTLAAGM ACEGLRPVVA IYSTFLQRAY DQLIHDVGIQ KLPVTFVLDR
AGIVGADGPT HQGQYDISYM RAIPNFTVMA PKDEAELQRM LVTCLQHDGP TALRIPRGSG
EGVPLMEEGW ETLPIGRGEL LREGDDLMIV AYGSMVAPAL ATATLLEEAG LSTTVINARF
LRPLDQALIH PLARRIPRVV TMEEGALPGG FGAAVLESLT DQDINVSMLR IGIPDKLVDH
ATPQQSKEAL GLTPAQMAER ILERFSNTSG DLPASASIKA LQA
|
|---|
| |