Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Syncc9605_1191 |
Symbol | secD |
ID | 3735880 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Synechococcus sp. CC9605 |
Kingdom | Bacteria |
Replicon accession | NC_007516 |
Strand | + |
Start bp | 1114583 |
End bp | 1116064 |
Gene Length | 1482 bp |
Protein Length | 493 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 637775781 |
Product | preprotein translocase subunit SecD |
Protein accession | YP_381501 |
Protein GI | 78212722 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0342] Preprotein translocase subunit SecD |
TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family [TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
Num covering plasmid clones | 28 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCGCGTT ATCAGGGTTG GTTTGCCCTT GTTCTTGCCC TGGCGATCGG CGCTGGGATG TTTTTGGTTC GTACGCCGCT GGAACTGGGC CTCGACCTAC GGGGCGGCAG TCAGCTCACC GTTGAAGTGA AGCCAGCCGG CGAGATCACC CGGGTTGGCG CCGAAGAGAT GGAAGCGGTG AAAGCCGTGC TCGATCGTCG GGTCAACGGT CTTGGTGTGG CTGAGTCCAC CCTGCAGACG GTGGGTGAGT CGCAGCTGGT GTTGCAGCTC CCCGGCGAGC AGGATCCCAC CGCCGCCGCG CGGGTTCTGG GCGATACGGC CCTGCTCGAG TTTCGTGCCC AAAAGTCCGA CACCGAGGCT GAGTTCCGTG GGCTGAGGCA GCTCCGTTCC CAGGTGGAAG CGATCCTCAG GTTGCGTGAG GATCAGATCC GCCGTGGTGA GACCCCGGAA CCACTGGATC TTGACCAGCT GAAGTCAACC CAGCAGACCC TGGGTCTTGA TGGCCAGGCC AGTACAGAGG AGGAGCAGCT GCGTCAGCTT CTGAACAAAG TTGATTCCGA TCTGCTCACG ATGCTTGAGC CGGCAGCTCT GACGGGCAAG CAGCTGGTGA CAGCAGGCCG CCAACCGCTC CAGAATAATC CGAACAACTG GGAGGTGACC CTCAATTTCG ATGGTGAGGG TGCTGAGGCC TTCGCTGATC TCACCAAATC GATTGCTGGT ACCGACCGGT TGCTGGCCAT CACCTTGGAC GATCAGCTGA TCAGTGCCGC CAGCGTTGGC CCCCAGTTCA AAAGCGCAGG AATCTCAGGT GGAGCAGCCA CCATTAGTGG CAATTTCAGC GCCGAAACGG CCCGTGAGCT GGAGGTGAAG CTGCGCGGCG GCTCCCTGCC CCTCCCGGTT GAAGTGATCG AGGTCCGCAC CATCGGGCCC ACTTTGGGAG CAGAGAACAT CCGCCGCAGC CTGGTGGCTT CCCTCTCGGG TCTGGCTCTG GTGGCGGTGT TCATGGTGGT GGCCTATCGC CTGCCGGGGG CGGTGGCCGT GATGGCCCTG AGCCTTTATG CCCTGTTCAA CCTGGCGGTG TACGCCTTGA TTCCGGTCAC CCTCACGTTG CCGGGAATCG CTGGTTTCAT TCTTTCAATC GGCATGGCCG TGGATGCCAA TGTGCTGATT TTTGAGCGGA TCAAGGACGA ATTACGGCGG GGCAACACCT TGATCCGGTC GATCGATACA GGCTTCTCTG AAGCCTTTTC ATCGATCGTT GATGGTCACC TGACCACGTT GATCAGCTGC GCAGCTCTGT TCTTCCTCGG CACCGGCCTG GTCAAGGGCT TTGCCGCGAC CCTGGGCATT GGTGTTCTGC TGAGTTTGTT CACGGCCCTG ACGTGCACCC GCACCCTGCT TCGTTTCCTG ATGGGCTACG CCGGTCTGCG TCGTGCCAGC AATTTTCTGC CCACCTGGCA ACTTCCTTCC CCCACCGCCT GA
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Protein sequence | MARYQGWFAL VLALAIGAGM FLVRTPLELG LDLRGGSQLT VEVKPAGEIT RVGAEEMEAV KAVLDRRVNG LGVAESTLQT VGESQLVLQL PGEQDPTAAA RVLGDTALLE FRAQKSDTEA EFRGLRQLRS QVEAILRLRE DQIRRGETPE PLDLDQLKST QQTLGLDGQA STEEEQLRQL LNKVDSDLLT MLEPAALTGK QLVTAGRQPL QNNPNNWEVT LNFDGEGAEA FADLTKSIAG TDRLLAITLD DQLISAASVG PQFKSAGISG GAATISGNFS AETARELEVK LRGGSLPLPV EVIEVRTIGP TLGAENIRRS LVASLSGLAL VAVFMVVAYR LPGAVAVMAL SLYALFNLAV YALIPVTLTL PGIAGFILSI GMAVDANVLI FERIKDELRR GNTLIRSIDT GFSEAFSSIV DGHLTTLISC AALFFLGTGL VKGFAATLGI GVLLSLFTAL TCTRTLLRFL MGYAGLRRAS NFLPTWQLPS PTA
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