Gene Syncc9605_1191 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSyncc9605_1191 
SymbolsecD 
ID3735880 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSynechococcus sp. CC9605 
KingdomBacteria 
Replicon accessionNC_007516 
Strand
Start bp1114583 
End bp1116064 
Gene Length1482 bp 
Protein Length493 aa 
Translation table11 
GC content61% 
IMG OID637775781 
Productpreprotein translocase subunit SecD 
Protein accessionYP_381501 
Protein GI78212722 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0342] Preprotein translocase subunit SecD 
TIGRFAM ID[TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCGCGTT ATCAGGGTTG GTTTGCCCTT GTTCTTGCCC TGGCGATCGG CGCTGGGATG 
TTTTTGGTTC GTACGCCGCT GGAACTGGGC CTCGACCTAC GGGGCGGCAG TCAGCTCACC
GTTGAAGTGA AGCCAGCCGG CGAGATCACC CGGGTTGGCG CCGAAGAGAT GGAAGCGGTG
AAAGCCGTGC TCGATCGTCG GGTCAACGGT CTTGGTGTGG CTGAGTCCAC CCTGCAGACG
GTGGGTGAGT CGCAGCTGGT GTTGCAGCTC CCCGGCGAGC AGGATCCCAC CGCCGCCGCG
CGGGTTCTGG GCGATACGGC CCTGCTCGAG TTTCGTGCCC AAAAGTCCGA CACCGAGGCT
GAGTTCCGTG GGCTGAGGCA GCTCCGTTCC CAGGTGGAAG CGATCCTCAG GTTGCGTGAG
GATCAGATCC GCCGTGGTGA GACCCCGGAA CCACTGGATC TTGACCAGCT GAAGTCAACC
CAGCAGACCC TGGGTCTTGA TGGCCAGGCC AGTACAGAGG AGGAGCAGCT GCGTCAGCTT
CTGAACAAAG TTGATTCCGA TCTGCTCACG ATGCTTGAGC CGGCAGCTCT GACGGGCAAG
CAGCTGGTGA CAGCAGGCCG CCAACCGCTC CAGAATAATC CGAACAACTG GGAGGTGACC
CTCAATTTCG ATGGTGAGGG TGCTGAGGCC TTCGCTGATC TCACCAAATC GATTGCTGGT
ACCGACCGGT TGCTGGCCAT CACCTTGGAC GATCAGCTGA TCAGTGCCGC CAGCGTTGGC
CCCCAGTTCA AAAGCGCAGG AATCTCAGGT GGAGCAGCCA CCATTAGTGG CAATTTCAGC
GCCGAAACGG CCCGTGAGCT GGAGGTGAAG CTGCGCGGCG GCTCCCTGCC CCTCCCGGTT
GAAGTGATCG AGGTCCGCAC CATCGGGCCC ACTTTGGGAG CAGAGAACAT CCGCCGCAGC
CTGGTGGCTT CCCTCTCGGG TCTGGCTCTG GTGGCGGTGT TCATGGTGGT GGCCTATCGC
CTGCCGGGGG CGGTGGCCGT GATGGCCCTG AGCCTTTATG CCCTGTTCAA CCTGGCGGTG
TACGCCTTGA TTCCGGTCAC CCTCACGTTG CCGGGAATCG CTGGTTTCAT TCTTTCAATC
GGCATGGCCG TGGATGCCAA TGTGCTGATT TTTGAGCGGA TCAAGGACGA ATTACGGCGG
GGCAACACCT TGATCCGGTC GATCGATACA GGCTTCTCTG AAGCCTTTTC ATCGATCGTT
GATGGTCACC TGACCACGTT GATCAGCTGC GCAGCTCTGT TCTTCCTCGG CACCGGCCTG
GTCAAGGGCT TTGCCGCGAC CCTGGGCATT GGTGTTCTGC TGAGTTTGTT CACGGCCCTG
ACGTGCACCC GCACCCTGCT TCGTTTCCTG ATGGGCTACG CCGGTCTGCG TCGTGCCAGC
AATTTTCTGC CCACCTGGCA ACTTCCTTCC CCCACCGCCT GA
 
Protein sequence
MARYQGWFAL VLALAIGAGM FLVRTPLELG LDLRGGSQLT VEVKPAGEIT RVGAEEMEAV 
KAVLDRRVNG LGVAESTLQT VGESQLVLQL PGEQDPTAAA RVLGDTALLE FRAQKSDTEA
EFRGLRQLRS QVEAILRLRE DQIRRGETPE PLDLDQLKST QQTLGLDGQA STEEEQLRQL
LNKVDSDLLT MLEPAALTGK QLVTAGRQPL QNNPNNWEVT LNFDGEGAEA FADLTKSIAG
TDRLLAITLD DQLISAASVG PQFKSAGISG GAATISGNFS AETARELEVK LRGGSLPLPV
EVIEVRTIGP TLGAENIRRS LVASLSGLAL VAVFMVVAYR LPGAVAVMAL SLYALFNLAV
YALIPVTLTL PGIAGFILSI GMAVDANVLI FERIKDELRR GNTLIRSIDT GFSEAFSSIV
DGHLTTLISC AALFFLGTGL VKGFAATLGI GVLLSLFTAL TCTRTLLRFL MGYAGLRRAS
NFLPTWQLPS PTA