Gene Syncc9605_0820 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSyncc9605_0820 
Symbol 
ID3735383 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSynechococcus sp. CC9605 
KingdomBacteria 
Replicon accessionNC_007516 
Strand
Start bp789329 
End bp791098 
Gene Length1770 bp 
Protein Length589 aa 
Translation table11 
GC content45% 
IMG OID637775417 
Productthiamine pyrophosphate-requiring enzyme 
Protein accessionYP_381143 
Protein GI78212364 
COG category[H] Coenzyme transport and metabolism
[E] Amino acid transport and metabolism 
COG ID[COG0028] Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.155153 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value1.31955e-05 
Fosmid HitchhikerNo 
Fosmid clonabilityunclonable 
 

Sequence

Gene sequence
ATGGCGCCTT ACAGGGCGCC TCATCGCTCA CCCCATTCTT ATTTCACTAT GAAAGGCCAT 
GAGGCAATCC TGAGGCAATT TCTTGCCAAC GGAATGGACC ATATGTTTGG AAATCCTGGG
ACAGTTGAGC AGGGATTTCT TGATGCTCTG GCTGATGTGC CAGAGATGAA ATACATTCTC
ACCTTGCAAG AGTCTATTGC TGTGCTGTGT GCAGATGGAT ATGCGAGGGC ACGATTGAAA
CCTGCTCTTG TTCAGATTCA CAGTTCACCT GGACTAGGGA ACGCCATTGG TAATCTTTAT
CAAGCCATGC GTGGGCAGGC TCCACTCGTT GTTATTGGGG GAGATGCTGG TATTAAATAT
CAAGCGATGG ATGCCCAGAT GGCTGCAGAT CTGGTTGCAA TGGCAGAGCC AGTGACAAAG
TGGTCTGCAA TGGTTCAACA TCCATCCAGT CTTTTGAGGA TGGTTCGCCG TGCTATCAAG
GTTGCAGCAA CACCTCCCTG TGGACCTGTT TATCTTTGCC TCCCTGAAGA CATTCTGGAT
GCTGAAATTA CGGAGAAAAT AATCCCCGCT CATATCCCAA GCCTTGAAAC ATGTCCAGGC
TCGCTGGATT TGGACCGTAT GGTTTCTGCA ATTCAGTCAG CACAGAACCC CATTATTTTG
GTTGGCGATG GTGTGGCCTG GACCGGAGGT GTTGAAAAAA TTGTTGATCT TGCAGAAACA
CTCGGCGCCA AGGTTTATTC GGCAGATGGT GGTGAAATTA ATTTTCCTGA TGACCACCTA
TTAAATTATG GAAGCACTGG GCATATGTTT GGTGATCAGA GTCTTCCGAT CATGCAATCA
TGTGATTTAT GTCTTACTTT GGGCTGTTAT TTACTGCCCG AAGTTTTTCC TCATCTCGGT
GACATTTTCA ATGAGGATGC CACGATTATT CATGTGGATA CCAACGTTGA TAACATCGCT
AAAAACCATA GGGTAGATAT ATCTTATGTG GCTGAACCCC ATTCTGTCGT TACAGGGTTA
TTGCCCATTC TTAAATCACT CTCGTCTAGC TGGCACAACG CAGCTCAACA AAGACGATCA
AAGCTCGAGT CAGAATCACC TGTAGTTCAT AACAACGTAG ATCAAAATTA TCAAGTTGAA
CCTCCGTATC CATCTGAGGC CTATGACGGT ATCAATCGTT CCATGCGTTC CGGATACTTT
ATTAAAACAT TGGCAGATAA GCTTCCAAAG GAAACTATTA TATTTGATGA AGCCTTAACC
AATTCACCTC CGGTGAATCG CTACCTTCCT GGCCAAAAAC CCGGTGATCG TATGTTGACG
CGTGGGGGTT CCCTCGGTAC AGGATTTCCA GGCGCCATTG GCGCAAAAAT AGCCTACCCC
GATCGATGTG TTATTGGCTT TTCCGGTGAT GGGGGGAGTA TGTACACCAT TCAGTGTTTG
TGGACTGCAG TAAGGCATAA TGTTGCAGCA AAATTTATTG TTTGTCAAAA TCGATCATAC
AAACTTCTTC AGTCCAATAT CTCAAAATTC TGGCAAGAAC GTGGAATTGA AGGTAGAGAG
TTTCCAGTAC CCTTTGATTT ATCAAAACCT GAAATTTGCT TCAGTGTGAT AGCTAATAGT
TTTGGTGTGA GTGGAGAACG TGTTGTTAGG CCAGATCAAG TTGGAGAAGC AATTGATAGG
ATGCTCAACC ATGATGGTCC CTACCTAATT AATCTAGTTC TCGATGGAGA TATCAGACCT
GATTTGATTG GCGTACGCTG CGGTCAGTGA
 
Protein sequence
MAPYRAPHRS PHSYFTMKGH EAILRQFLAN GMDHMFGNPG TVEQGFLDAL ADVPEMKYIL 
TLQESIAVLC ADGYARARLK PALVQIHSSP GLGNAIGNLY QAMRGQAPLV VIGGDAGIKY
QAMDAQMAAD LVAMAEPVTK WSAMVQHPSS LLRMVRRAIK VAATPPCGPV YLCLPEDILD
AEITEKIIPA HIPSLETCPG SLDLDRMVSA IQSAQNPIIL VGDGVAWTGG VEKIVDLAET
LGAKVYSADG GEINFPDDHL LNYGSTGHMF GDQSLPIMQS CDLCLTLGCY LLPEVFPHLG
DIFNEDATII HVDTNVDNIA KNHRVDISYV AEPHSVVTGL LPILKSLSSS WHNAAQQRRS
KLESESPVVH NNVDQNYQVE PPYPSEAYDG INRSMRSGYF IKTLADKLPK ETIIFDEALT
NSPPVNRYLP GQKPGDRMLT RGGSLGTGFP GAIGAKIAYP DRCVIGFSGD GGSMYTIQCL
WTAVRHNVAA KFIVCQNRSY KLLQSNISKF WQERGIEGRE FPVPFDLSKP EICFSVIANS
FGVSGERVVR PDQVGEAIDR MLNHDGPYLI NLVLDGDIRP DLIGVRCGQ