| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Syncc9605_0336 |
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| Symbol | |
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| ID | 3737416 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Synechococcus sp. CC9605 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007516 |
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| Strand | - |
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| Start bp | 347824 |
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| End bp | 350934 |
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| Gene Length | 3111 bp |
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| Protein Length | 1036 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637774921 |
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| Product | RND family multidrug efflux transporter |
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| Protein accession | YP_380667 |
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| Protein GI | 78211888 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.00677984 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | GTGCGGTCGA TCTCCCAGCC GTTTCTTCGG CGGCCGGTTC TGACGGTCGT CTGCAGCCTG
CTGATCCTTT TAGCGGGCTG CACGGCTTTG TTCGGCCTAG GACTGGAGGA TCTTCCGCCC
CTCGCTCCCA CCCGCGTGAG TGTGAGCGCC AACTTCCCGG CGGCTTCACC AGAGGTGGTG
GAGCAGAGCG TGACCCGGGT ATTGGAACAA CAGCTGAACG GCCTAGAAGG GGTCGAAAGC
ATCAGCTCAA CCAGCAGGCA GGGCGGCGCC AGCATCTCGT TGCACTTCAA AACGGGTGAT
CCCGAGCTGA ATGCGATCAA GGTTCAAAAC GAGGTGAACC TGGCCAGCCG ACGGCTGCCC
CAGGCCGTGA CGCGCCAGGG GCTCCAGGTG CGGCGCTCCT CGGAAGACCT ATTGATGATC
CTGGGGTTCA GCCACCCACT GGATCAATAC GTCCCCACCT TTCTCACGGG CTGGCTGGAC
CAGACCCTGC GGGATGAACT CCTCACCACA CCTGGCATCG GCGATGTGCA GATCTTCGGC
AGCAGTGAAC TCTCCTTTCG CCTGTGGTTG GATCCGCAAC GCCTCGAACA GACCAACCTC
ACCCTTGGCG AAGTCAGCCG AGCCCTGGCT GAACAGAACG TCTTGGCTGC CATTGGCAGC
ATCGGAGCTG CCCCAGTTCC AGCGGGCCAA GTGCTGAGCC TTCCGGTGGA AGCGGAAGGG
CGACTTCGCA GCCAATCGGA TTTCGAGAAC CTCGTCTTGC GCCGGTTGGA CAACGGCGGG
CTGCTGCGCC TGAAGGATGT GGGACGGGTT GCCCTCGGAC AGCGCAACTA CGGACGCGAG
GCCATGAATC TGGCTGGCGA GCGCTCCGTG GCCGTGGGGG TCTACCAGCG CGATGGGGCC
AATGCCCTGG ACGTGAGCAG GGCGATCAAG CGCAAGCTGC AGCAGTTGGA AGCGAGCTTT
CCCCCGGGGA TCGAACTGTC GATGATCGTG GATGTGGCCG ACACGGTTCA GGCCAACCTC
GATCGCACCT TCATTACCCT GCGCGATGCC GTGTTGCTGG TGCTGGTGGT GCTGGTGCTG
TTTCTGGGCC GCTGGCGTCT CGCCCTGATC CCTGGCCTTG CCGTGCCGGT GGCGCTGGTG
GGAAGCCTCA GCCTGGTGAA ACTGAGCGGT TCCAATCTCA ACAGCCTGAT CCTCTTTGGG
CTGGTGCTGG CCACCGGGAT CGTTGTGGAT GACGCCATCG TCGTCAGCGA AGACATCGCC
GGACGCATCG AACGGGGCAC ACCCCCCGAA CAGGCGGCCG AGGACGCCAT GGCTGAGCTG
GCGACGGCCG TTGTGGCCAC CTCATTGGTG CTGGCAGCCG TGTTCCTGCC CGTGCTGCTC
ATTCCCGGAT CGATCGGACG CCTCTATCAA CCGATCGCCC TGGCCATCAG CGGAGCGATT
CTGTTCTCCA CCTTGAATGC GCTCAGCTTC ACCCCGATGG CCTGCGCCCG GGTGTTGGGC
CCAGGGGGCG GCCGTCTTCC TGGGGCCATC GGCAAGCTGA GCCGCTGGCT TCGGCATGGC
ATGCAAACCC TGCAATCCCA ATACTCGAAA CAACTTGAGC ACTGGTTGCA GCGCAGGCGA
CGCATCGCCC TCGTGCTGCT GAGCGGCCTG GTCATCACGG CCTCAGGATT GGCCGTGATG
CCGACGGCGT TCATCCCCGA TGACGACCAA GGCCAGATCC GCGGCTACTT CACCCTTCCC
GACGGCGCCA GCTTGGAGCG CAGCATGGCC GTGATGGACG ACATCCGACG CGTCGTGAGT
GAAGAGCCCC AGGTGCGCAC TGGCAACTTT TATGCCGGCA GCTCCTTCGG GCAAAGCGGA
GAAGACCGTG GATCATTTTA CCTGCGCCTT CAGCCACTTA AGGATCGGCC CGGCAAAGAA
CAGAGCAGCA ACGCCATCAA AGGTCGTCTC AACCGAAAGA TTCAGCAACG AATTGGTGAT
GCCAGGGTCG TGCTGATCAC ACCACCAACC GTGCGGGGCT TCAGCAGTGA ATCAGGACTC
TCCCTGGAAC TGCTGGACCG CAGCGGAGGG CAATTCAGCC TGGAGCAATT CGGCCAAGTC
GCCCAGGACT TCATCCAGAC GGCCAAGGCG ACAGAGCGGT TTGAACGGGT GAGCACCCGC
TTTGATGCCA GCTTCCCCCG CTGGCGGCTG GAGCTCAACC GCGACCAACT GGCTGCTCTC
GACCTCGACT ACGGCGCAAC ACTGCGGGAG ATCGGCACCG CCTTCGGCGG CAGCTACATC
GATGACACCT ACGACGACGG TCGCATCCGC TCCATTGTTC TTCAGCTGGA TGGCCGCGAG
CGACGTCGGC CGGAGGATCT GACGGGTCTG ATGGTGCGCA ACCGCAGCGG TGAGCTGGTG
TCGGTGGCAA GCGTTGCCAG CCTGACCCGC GAGGAGGGCG TTAACAACAT TCGCCACTTC
GGGCTCAACC GGGCCATCCG GATCACGGCC ATCCCCGCAC CAACGGTCAG CAGCGGAGAA
GCCATCGATG CCCTGACCCA GGCCGGTGAT CGCATTGGCG GCAGCAACAT CGACCTGGCC
TTCACGGGCC TGGCGTTGGA AGAGCAACGG GCTGGGCAGG TGACTTGGGT GCTGTTCGCC
CTCGGCGTGA CGGTGGTCTA TCTGCTTCTT GCCGCTCTCT ACGAGAGTTT CATCGACCCA
TTGATCATCC TGCTCACGGT GCCATTGGCC CTGCTCGGAG CCCTGATCGG CTTGAAATTG
CGGGGCCTTC CACTGGATGT TTACGGCCAG ATGGGACTCC TGGTGCTGGT GAGCCTGGCG
GCCAAAAACG GAATTCTGAT CGTGGAGTTC GCCAACCAGC GGATTGCAGC AGGCCTGCCC
CTACACGAAG CAACTGTTGT TGCCGCCGTG AACCGGATGC GCCCGATCCT GCTGACAGCG
ATTACATCCC TGGCAGGTTT CCTGCCGCTT TTGTTCGCCC AGGGCACGGG AGCCGCCAGC
AGGATCAGCA TTGGCACCGT GGTGTTCAGC GGACTGCTGG TGGCCTCATT GCTGTCTCTC
TATGTGGTAC CAACTGTTTA CCTGTTGCTG AAGCGCTGGA GATCGGCATG A
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| Protein sequence | MRSISQPFLR RPVLTVVCSL LILLAGCTAL FGLGLEDLPP LAPTRVSVSA NFPAASPEVV
EQSVTRVLEQ QLNGLEGVES ISSTSRQGGA SISLHFKTGD PELNAIKVQN EVNLASRRLP
QAVTRQGLQV RRSSEDLLMI LGFSHPLDQY VPTFLTGWLD QTLRDELLTT PGIGDVQIFG
SSELSFRLWL DPQRLEQTNL TLGEVSRALA EQNVLAAIGS IGAAPVPAGQ VLSLPVEAEG
RLRSQSDFEN LVLRRLDNGG LLRLKDVGRV ALGQRNYGRE AMNLAGERSV AVGVYQRDGA
NALDVSRAIK RKLQQLEASF PPGIELSMIV DVADTVQANL DRTFITLRDA VLLVLVVLVL
FLGRWRLALI PGLAVPVALV GSLSLVKLSG SNLNSLILFG LVLATGIVVD DAIVVSEDIA
GRIERGTPPE QAAEDAMAEL ATAVVATSLV LAAVFLPVLL IPGSIGRLYQ PIALAISGAI
LFSTLNALSF TPMACARVLG PGGGRLPGAI GKLSRWLRHG MQTLQSQYSK QLEHWLQRRR
RIALVLLSGL VITASGLAVM PTAFIPDDDQ GQIRGYFTLP DGASLERSMA VMDDIRRVVS
EEPQVRTGNF YAGSSFGQSG EDRGSFYLRL QPLKDRPGKE QSSNAIKGRL NRKIQQRIGD
ARVVLITPPT VRGFSSESGL SLELLDRSGG QFSLEQFGQV AQDFIQTAKA TERFERVSTR
FDASFPRWRL ELNRDQLAAL DLDYGATLRE IGTAFGGSYI DDTYDDGRIR SIVLQLDGRE
RRRPEDLTGL MVRNRSGELV SVASVASLTR EEGVNNIRHF GLNRAIRITA IPAPTVSSGE
AIDALTQAGD RIGGSNIDLA FTGLALEEQR AGQVTWVLFA LGVTVVYLLL AALYESFIDP
LIILLTVPLA LLGALIGLKL RGLPLDVYGQ MGLLVLVSLA AKNGILIVEF ANQRIAAGLP
LHEATVVAAV NRMRPILLTA ITSLAGFLPL LFAQGTGAAS RISIGTVVFS GLLVASLLSL
YVVPTVYLLL KRWRSA
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