Gene Syncc9605_0093 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSyncc9605_0093 
Symbol 
ID3736343 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSynechococcus sp. CC9605 
KingdomBacteria 
Replicon accessionNC_007516 
Strand
Start bp93773 
End bp94780 
Gene Length1008 bp 
Protein Length335 aa 
Translation table11 
GC content58% 
IMG OID637774675 
Producttype II alternative sigma-70 family RNA polymerase sigma factor 
Protein accessionYP_380427 
Protein GI78211648 
COG category[K] Transcription 
COG ID[COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02997] RNA polymerase sigma factor, cyanobacterial RpoD-like family 


Plasmid Coverage information

Num covering plasmid clones29 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCTCCGG CTGCGACCGC TGCTTCCAAG CCCAAAACCT CTGTGAAGAC GGCAAAAGCC 
GTCACGGCTG ACGTTGATCT GGTTCGTTCC TATCTGCGAG ACATTGGCCG TGTGCCCCTT
CTGACCCACG AGCAGGAGAT CACCCTGGGA CGGCAAGTCC AGGAACTGAT GGATTTGGAG
TCACTCGAGT CTGAGCTGAA GAGCAAGGCC GGTGAGAAGC CCAGTCGCGA CCAGCTTGCC
AAGGCCTCAG GTCTGTCCTC GATACAGCTG AAGCGCAAGC TTCAGCACGG TCGCCGCGCC
AAGGAGCGGA TGGTGGCTGC CAATCTCCGA CTTGTGGTTA GCGTTGCAAA GAAATACACC
AAACGGAACA TGGAACTCCT GGACCTGATC CAGGAAGGAA CCATCGGTTT GGTGCGCGGC
GTCGAGAAGT TTGATCCCAC CCGCGGTTAC AAGTTCTCCA CCTACGCCTA TTGGTGGATT
CGTCAGGGGA TTACACGGGC TATCGCGGAA AAGAGCCGCA CGATCCGGCT TCCGATCCAC
ATCACCGAGA TGCTGAACAA GCTCAAGAAG GGTCAGCGAG AGCTGAGCCA GGAGCTGGGA
CGCACACCCA CCGTCACCGA GTTGGCTGAG TTCGTTGAGC TGCCTGAGGA CGACGTCAAG
GATCTGATGT GCCGTGCCCG TCAGCCCGTC AGTCTTGAAA TGAAGGTTGG TGATGGTGAC
GACACTGAAC TTCTTGAATT GCTTTCCGGA GATGGCGATT TGCCTAGCGA TCAAGTGGAA
GAGGACTGCT TGAAGGGTGA TCTCCGCAGC CTGTTGGGGC AATTGCCTCA CTTGCAGGAG
CAGGTGTTGC GCATGCGTTA CGGCATGGAT GGGGAAGATC CGATGAGCCT CACGGGAATC
GGTCGGATCC TGGGCATGAG CCGCGACCGT GTTCGCAACC TCGAGCGCGA TGGTTTGGCC
GGTCTGCGCC GGGTTAGTGA TCAGGTGGAG GCCTACGTCG CCTGCTGA
 
Protein sequence
MAPAATAASK PKTSVKTAKA VTADVDLVRS YLRDIGRVPL LTHEQEITLG RQVQELMDLE 
SLESELKSKA GEKPSRDQLA KASGLSSIQL KRKLQHGRRA KERMVAANLR LVVSVAKKYT
KRNMELLDLI QEGTIGLVRG VEKFDPTRGY KFSTYAYWWI RQGITRAIAE KSRTIRLPIH
ITEMLNKLKK GQRELSQELG RTPTVTELAE FVELPEDDVK DLMCRARQPV SLEMKVGDGD
DTELLELLSG DGDLPSDQVE EDCLKGDLRS LLGQLPHLQE QVLRMRYGMD GEDPMSLTGI
GRILGMSRDR VRNLERDGLA GLRRVSDQVE AYVAC