Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Syncc9605_0093 |
Symbol | |
ID | 3736343 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Synechococcus sp. CC9605 |
Kingdom | Bacteria |
Replicon accession | NC_007516 |
Strand | + |
Start bp | 93773 |
End bp | 94780 |
Gene Length | 1008 bp |
Protein Length | 335 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 637774675 |
Product | type II alternative sigma-70 family RNA polymerase sigma factor |
Protein accession | YP_380427 |
Protein GI | 78211648 |
COG category | [K] Transcription |
COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family [TIGR02997] RNA polymerase sigma factor, cyanobacterial RpoD-like family |
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Plasmid Coverage information |
Num covering plasmid clones | 29 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCTCCGG CTGCGACCGC TGCTTCCAAG CCCAAAACCT CTGTGAAGAC GGCAAAAGCC GTCACGGCTG ACGTTGATCT GGTTCGTTCC TATCTGCGAG ACATTGGCCG TGTGCCCCTT CTGACCCACG AGCAGGAGAT CACCCTGGGA CGGCAAGTCC AGGAACTGAT GGATTTGGAG TCACTCGAGT CTGAGCTGAA GAGCAAGGCC GGTGAGAAGC CCAGTCGCGA CCAGCTTGCC AAGGCCTCAG GTCTGTCCTC GATACAGCTG AAGCGCAAGC TTCAGCACGG TCGCCGCGCC AAGGAGCGGA TGGTGGCTGC CAATCTCCGA CTTGTGGTTA GCGTTGCAAA GAAATACACC AAACGGAACA TGGAACTCCT GGACCTGATC CAGGAAGGAA CCATCGGTTT GGTGCGCGGC GTCGAGAAGT TTGATCCCAC CCGCGGTTAC AAGTTCTCCA CCTACGCCTA TTGGTGGATT CGTCAGGGGA TTACACGGGC TATCGCGGAA AAGAGCCGCA CGATCCGGCT TCCGATCCAC ATCACCGAGA TGCTGAACAA GCTCAAGAAG GGTCAGCGAG AGCTGAGCCA GGAGCTGGGA CGCACACCCA CCGTCACCGA GTTGGCTGAG TTCGTTGAGC TGCCTGAGGA CGACGTCAAG GATCTGATGT GCCGTGCCCG TCAGCCCGTC AGTCTTGAAA TGAAGGTTGG TGATGGTGAC GACACTGAAC TTCTTGAATT GCTTTCCGGA GATGGCGATT TGCCTAGCGA TCAAGTGGAA GAGGACTGCT TGAAGGGTGA TCTCCGCAGC CTGTTGGGGC AATTGCCTCA CTTGCAGGAG CAGGTGTTGC GCATGCGTTA CGGCATGGAT GGGGAAGATC CGATGAGCCT CACGGGAATC GGTCGGATCC TGGGCATGAG CCGCGACCGT GTTCGCAACC TCGAGCGCGA TGGTTTGGCC GGTCTGCGCC GGGTTAGTGA TCAGGTGGAG GCCTACGTCG CCTGCTGA
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Protein sequence | MAPAATAASK PKTSVKTAKA VTADVDLVRS YLRDIGRVPL LTHEQEITLG RQVQELMDLE SLESELKSKA GEKPSRDQLA KASGLSSIQL KRKLQHGRRA KERMVAANLR LVVSVAKKYT KRNMELLDLI QEGTIGLVRG VEKFDPTRGY KFSTYAYWWI RQGITRAIAE KSRTIRLPIH ITEMLNKLKK GQRELSQELG RTPTVTELAE FVELPEDDVK DLMCRARQPV SLEMKVGDGD DTELLELLSG DGDLPSDQVE EDCLKGDLRS LLGQLPHLQE QVLRMRYGMD GEDPMSLTGI GRILGMSRDR VRNLERDGLA GLRRVSDQVE AYVAC
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