| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cag_1989 |
|---|
| Symbol | |
|---|
| ID | 3747368 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chlorobium chlorochromatii CaD3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007514 |
|---|
| Strand | + |
|---|
| Start bp | 2525145 |
|---|
| End bp | 2526851 |
|---|
| Gene Length | 1707 bp |
|---|
| Protein Length | 568 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 637774526 |
|---|
| Product | ribonuclease E and G |
|---|
| Protein accession | YP_380280 |
|---|
| Protein GI | 78189942 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1530] Ribonucleases G and E |
|---|
| TIGRFAM ID | [TIGR00757] ribonuclease, Rne/Rng family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAAA GTTCGACGAA GCAGTTGCTT ATGAATAAAA CCGGCGACGA AATTCAGGTT
GCGCTGGTTG AAGAGGGACG ATTAGTAGAA TTAATTATTG AGCGTCCCGA AAGTCGCCGC
AGCATTGGCG ATATTTATCT TGGACGCGTC CATAAAGTGG TGGAGGGGCT GAAAGCCGCC
TTTGTTGATA TTGGGCAAAA GTCGGATGGC TTTTTGCACT TTTCAGATGT TGGCACCACA
AACGAAGATT ATCGCGCCCT TATTGAGGAC GATGATGACG ACGATGCCAT TATCGGCGAC
GATATTGAGA GCGATGAAGC AACCGGCCAG AACGATTCCG AATTTGATGA GGCAAGCGAT
GGCGAAACTA CGGTGAGTGC CCCAAAAACA GTGGCGCGTA GCAACAGCAA AAAGCCCTCA
TCAGGCGAGC AAAGTGGGGA AAAGCCACAA ACCTACACGC AAATGATTGC AGGTAAGCTC
AAGCCCAACG ACTCCATTTT AGTGCAGGTT ATTAAGGAGC CAATTAGTAG CAAAGGTTCT
CGCTTAACCT CCGACATTAC GATTGCTGGG CGTTTTATGG TACTCCTACC GTTTGGCGGT
GGGCAGGTTG CCGTATCGCG CCGAGTGGTA TCGCGCAAAG AGCGCTCGCG TTTAAAAAAG
TTAGTGCGCT CCATACTGCC CGAAGGTTTT GGCGCTATTA TTCGCACGGT TGCCGAAGAT
CAAGAAGAGG CGCTTCTCAA GCAAGATTTA GAAAAGCTGC TAACAAAGTG GAAGCAAATT
GAAGAAAAGC TACAAGATGC CACGCCACCG CAACTTATTT TTAAAGAGGA TACCATTATC
TCCAGCGTAT TGCGCGATTC GCTCACCTCT GACGTCAGCG AAATTGTGGC AAACTCGCCC
GCCATCTACA AAGAGACGCT TAATTACATT GAGTGGGCTG CTCCCGAAAT GGTAAAAAAT
GTAGCGCTTT ACCAAGGCAA GTTGCCACTT TTTGAAGGGT ACGCTATTGC AAAGGATGTT
GAATCCATTT TTTCGCGCAA AGTGTGGCTA AAGTCGGGCG GCTACATTAT TATTGAACAC
ACCGAAGCCA TGGTGGTTGT TGACGTGAAC AGCGGTCGCT ATGCTGCCAA GCGAGAGCAA
GAAGAAAATT CATTAAAAAC CAATCTTGAA GCGGCGCGTG AAGTGGTGCG CCAATTACGG
TTGCGCGATA TTGGGGGCAT TATTGTGGTT GATTTTATTG ATATGCTTGA TCCCAAAAAT
GCCAAAAAGA TTTATGATGC CGTAAAAACC GAGTTGCGCA ACGATCGCGC AAAGTCAAAC
ATTTTGCCAA TGTCGGACTT TGGCTTAATG CAAATTACCC GCGAACGAAT TCGCCCCAGC
CTTATGCAGC GCATGGGCGA TCAATGCCCT GCCTGTGGAG GTACGGGCAT TGTACAAGCG
CGTTTTACCA CCATTAACCA AATTGAGCGT TGGCTTCGCA AATATGCGTT GCAGCACCCG
CTTCGCTTTC AGCAGCTTGA TCTTTACGTA AGCCCAACGG TTTTAGAGCC ACTGCAAAAC
AGCGACATGA AAACCGAAAT GAAGTGGTTT TTGCAACACA TGCTTTTTGT TACCGTTAAA
GGCGATGAAA GCCTTCGTAG CGATGACTTT AGATTTTACA ATCGCAAAAA CAATAAGGAT
ATAACTGCCG AATATGGCGA GTTATAG
|
|---|
| Protein sequence | MKKSSTKQLL MNKTGDEIQV ALVEEGRLVE LIIERPESRR SIGDIYLGRV HKVVEGLKAA
FVDIGQKSDG FLHFSDVGTT NEDYRALIED DDDDDAIIGD DIESDEATGQ NDSEFDEASD
GETTVSAPKT VARSNSKKPS SGEQSGEKPQ TYTQMIAGKL KPNDSILVQV IKEPISSKGS
RLTSDITIAG RFMVLLPFGG GQVAVSRRVV SRKERSRLKK LVRSILPEGF GAIIRTVAED
QEEALLKQDL EKLLTKWKQI EEKLQDATPP QLIFKEDTII SSVLRDSLTS DVSEIVANSP
AIYKETLNYI EWAAPEMVKN VALYQGKLPL FEGYAIAKDV ESIFSRKVWL KSGGYIIIEH
TEAMVVVDVN SGRYAAKREQ EENSLKTNLE AAREVVRQLR LRDIGGIIVV DFIDMLDPKN
AKKIYDAVKT ELRNDRAKSN ILPMSDFGLM QITRERIRPS LMQRMGDQCP ACGGTGIVQA
RFTTINQIER WLRKYALQHP LRFQQLDLYV SPTVLEPLQN SDMKTEMKWF LQHMLFVTVK
GDESLRSDDF RFYNRKNNKD ITAEYGEL
|
|---|
| |