| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cag_1223 |
|---|
| Symbol | |
|---|
| ID | 3748257 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chlorobium chlorochromatii CaD3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007514 |
|---|
| Strand | + |
|---|
| Start bp | 1622461 |
|---|
| End bp | 1624599 |
|---|
| Gene Length | 2139 bp |
|---|
| Protein Length | 712 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 637773757 |
|---|
| Product | methylmalonyl-CoA mutase |
|---|
| Protein accession | YP_379528 |
|---|
| Protein GI | 78189190 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1884] Methylmalonyl-CoA mutase, N-terminal domain/subunit
[COG2185] Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) |
|---|
| TIGRFAM ID | [TIGR00640] methylmalonyl-CoA mutase C-terminal domain
[TIGR00641] methylmalonyl-CoA mutase N-terminal domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAACCCG ATTTTTCACG CATCAATCTC ACGACGCCAT CTTTCACTCT CCCTAAAAAA
GAGGCAACGG AAGCAAGCTG GCTGACGGCG GAAGGCATTG CATTGCAAGC AACTTACCAT
GCTGACGATA TAACCGATCA GCACGCTTTG CATTTTGCCC CTGGCTTTGC GCCTTACAGC
GGCGGACCTT ATTCCACCAT GTACACCACT CGCCCATGGA CAATTCGCCA ATATGCAGGC
TTTTCAACGG CTGAAGAGTC AAACCGTTTT TATCGTCAAA ACCTTGCCGC TGGGCAGAAA
GGGCTTTCGG TAGCCTTTGA TCTGCCAACC CATCGCGGCT ACGATTCCGA CCATCCGCGC
GTTGTGGGCG ATGTTGGCAA AGCAGGCGTT GCGGTGGATT CGGTAGAGGA TATGAAGATT
CTCTTCGACC AAATTCCCCT TGGCGACATC TCCGTTTCAA TGACCATGAA TGGCGCCGTA
CTGCCCGTCA TGGCATTTTA CATTGTGGCA GCCGAAGAGC AAGGCGTTCC CTCCGAAAAG
CTCAGCGGCA CCATTCAAAA CGATATTTTA AAAGAGTTTA TGGTGCGCAA CACCTACATT
TACCCACCCG AACCCTCCAT GCGCATCATT GCTGATATTT TTCGCTACAC CAGCGCCAAC
ATGGCAAAGT TCAACTCCAT TAGCATTTCG GGCTACCACA TGCAAGAGGC AGGCGCTACC
GCCGAGCAGG AATTAGCCTT TACCCTTGCC GATGGACTTG AGTACCTCCG CACAGGCTTA
AAAGCAGGAC TTGCCATTGA CGACTTTGCC CCTCGCCTCT CCTTTTTTTG GGGCATTGGC
ATGAACTACT TTATGGAAAT TGCAAAGCTC CGCGCCGCCC GTATGCTATG GGCAAAGTTG
GTAAAGCAGT TCAACCCAAA AAATCCAAAA TCGCTCATGT TGCGCTCCCA CTGCCAAACC
TCAGGCTGGA GCTTAACCGA GCAAGATCCC TTCAACAACA TCACCCGCAC GGCGTTGGAA
GCTATGGCAG CCGCACTTGG GCACACGCAA TCGCTCCACA CCAATGCGCT TGACGAAGCA
ATTGCCCTGC CAACACCATT TTCAGCCCGC ATAGCCCGCA ACACGCAGCT ATACCTGCAA
GAAGAGACCG CCATCACCAA AAGCATTGAC CCATGGGCAG GCTCCTACTA CGTTGAGCGC
TTAACAACCG AACTTGCTGA AAAAGCGTGG GGAATTATTG AAGAGATTGA AGCCGCAGGT
GGCATGGTGC AAGCAATTGA GCAAGGATTG CCAAAATTGC AAATTGAAGC CGCCGCAACC
CGTCGCCAAG CCCGCATTGA TAGCGGTAAA GAGATTTTAG TTGGCGTAAA TTATTACCGC
ACCGAACAAA AAACCGACAT TGAGCTGCTT GAAGTGGACA ACAGCGCCGT TTTAAAACAA
CAAGTTGAAC GCCTTGCCAC CATTAAAGCC ACCCGCAACA ACCCAGCCTG CACCGAAGCC
TTGCAAGCAC TGGAGCAATG CGCCGCATCG GGCGAAGGCA ATCTGCTTGA ATTAGCCGTA
AACGCCGCCC GCCACCGCGC AACACTTGGT GAAATTTCCT TTGCTTGCGA AAAAACCTTT
GGACGCTACC GCTCAACCAC TCGCCTCAAC AGCGCCATGT ACCGTGATGA AATGAAAGAC
AACCAGAGTT TTCAAGAAGC ACAACGCTTA GCCGACCACG TAGCCGAATT AGAAGGACGC
CGCCCACGCA TTATGATTGC CAAAGTTGGG CAAGATGGGC ACGACCGAGG CGCCAAAGTA
ATTGCCGCCG CCTTTGCCGA CATTGGCTTT GATGTGGACA TTAGCCCACT CTTTCAAACG
CCCGACGAAG TAGTACAGCA AGCACTCGAC AACGACGTTC ACCTTATAGG CATTTCAAGC
CTTGCCGCAG GGCACAAAAC ACTCATTCCT GCCATTGTAG AAGGCTTACA AAAAGAGGGG
CGAAGCGACA TTATCGTTGT TGCAGGTGGC GTTATTCCCG AACGCGACTA CCAATTTTTA
TACGACCACG GCGTTGCCGC CGTTTTTGGA CCAGGCACCG TTATTGCCGA AGCCGCCATC
ACCATTCTTA AAAAAATGAT GACGAATGAT ACGATTTGA
|
|---|
| Protein sequence | MKPDFSRINL TTPSFTLPKK EATEASWLTA EGIALQATYH ADDITDQHAL HFAPGFAPYS
GGPYSTMYTT RPWTIRQYAG FSTAEESNRF YRQNLAAGQK GLSVAFDLPT HRGYDSDHPR
VVGDVGKAGV AVDSVEDMKI LFDQIPLGDI SVSMTMNGAV LPVMAFYIVA AEEQGVPSEK
LSGTIQNDIL KEFMVRNTYI YPPEPSMRII ADIFRYTSAN MAKFNSISIS GYHMQEAGAT
AEQELAFTLA DGLEYLRTGL KAGLAIDDFA PRLSFFWGIG MNYFMEIAKL RAARMLWAKL
VKQFNPKNPK SLMLRSHCQT SGWSLTEQDP FNNITRTALE AMAAALGHTQ SLHTNALDEA
IALPTPFSAR IARNTQLYLQ EETAITKSID PWAGSYYVER LTTELAEKAW GIIEEIEAAG
GMVQAIEQGL PKLQIEAAAT RRQARIDSGK EILVGVNYYR TEQKTDIELL EVDNSAVLKQ
QVERLATIKA TRNNPACTEA LQALEQCAAS GEGNLLELAV NAARHRATLG EISFACEKTF
GRYRSTTRLN SAMYRDEMKD NQSFQEAQRL ADHVAELEGR RPRIMIAKVG QDGHDRGAKV
IAAAFADIGF DVDISPLFQT PDEVVQQALD NDVHLIGISS LAAGHKTLIP AIVEGLQKEG
RSDIIVVAGG VIPERDYQFL YDHGVAAVFG PGTVIAEAAI TILKKMMTND TI
|
|---|
| |