Gene Cag_1116 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCag_1116 
Symbol 
ID3748334 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChlorobium chlorochromatii CaD3 
KingdomBacteria 
Replicon accessionNC_007514 
Strand
Start bp1505789 
End bp1507711 
Gene Length1923 bp 
Protein Length640 aa 
Translation table11 
GC content49% 
IMG OID637773647 
ProductDEAD/DEAH box helicase-like 
Protein accessionYP_379421 
Protein GI78189083 
COG category[J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair 
COG ID[COG0513] Superfamily II DNA and RNA helicases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGTGAAC AACAGCTTCC TCTTGAAAAC AATTTTTTCT CGCTTCAACT TCCTGAACTT 
TTAATGAAAG CGCTCGAAGA GGTGGGTTAC GAAAGCCCAA CTCCTATTCA AGCACAAACT
ATTCCTTTTT TGCTTGCAGG GCGCGATGTA CTTGGTCAAG CGCAAACGGG TACAGGTAAA
ACTGCGGCTT TTGCTTTACC AATTCTTGCC TCTATTGATA TACAGCAAGC AGAGCCACAA
GCGCTTGTGT TGGCTCCAAC TCGTGAGTTA GCTATTCAGG TTGCCGAAGC TTTTCAGCGT
TATGCCGAGT ACCTAAAAGG GTTCCATGTA GTGCCAATTT ATGGTGGGCA AGATTATGGC
ATTCAGTTCC GCATGTTGCG CCGTGGGGTG CAAGTTGTGG TTGGCACGCC CGGTCGTGTT
ATGGATCACA TTCGTCGTGG TTCGCTGAAC CTTACCCACT TAAAGACGTT GGTGCTTGAT
GAAGCTGATG AAATGTTGCG CATGGGCTTT ATTGATGATG TTGAGTGGAT TTTAGAACAA
ACGCCTGCTG GGCGTCAAGT GGCACTCTTT TCAGCCACCA TGCCGCCGCC AATTCGTCGC
ATTGCACAAA AGTATCTCGA CCAACCGGCT GAAGTTACCA TTCAAACGAA AACCACAACG
GTTGATACCA TTCGCCAGCG TTATTGGGTG GTTGGTGGTA GCCACAAGCT TGATATTCTT
ACCCGTATTT TAGAGGTAGA GCCGTTTGAT GGTATGATTA TTTTTTCGCG TACCAAAACC
ATGACTATCG AACTTGCCGA AAAGCTGCAA GCGCGTGGTT ATGCCGCTGC GGCGCTGAAT
GGCGATATGC CCCAAAATCA ACGTGAGCGT ACCATTGAGC AGCTTAAAAA TGGGAACATC
AACATTGTAG TAGCTACCGA CGTTGCGGCG CGTGGACTTG ATGTTGAGCG CATTAGCCAT
GTGGTAAACT ACGACATTCC ATCCGATACC GAATCCTACG TTCATCGCAT TGGGCGTACA
GGGCGTGCAG GACGTGCAGG TGATGCCATT TTGTTTGTAG CACCTCGCGA AAAAAATATG
CTCTATGCTA TTGAAAAAGC TACCCGTAGC CGCATTGAGC AAATGGTGCT GCCAACAACG
GAGGTTATTA ACAACAAACG TATTGCAAAG TTTAATCAGC GTATTTCCGA TACCATTGCG
GCTGAAGACC TTGGCTTTTT TACTCGCATG ATTGAGCAGT ATTGCAACGA GCACAATGTA
CCCATGCTGG ATGCGGCTGC TGCGCTTGCC TCGTTAGTAC AGGGTGAAAC ACCTCTGCTG
TTAGCCGATA AACCTGAGCG TAGCCGTTCA TCAGAGCGCG ATTCGTATGG CAGTAGCCGC
GACCGTGGCT TTGAACGTGA AGGGCGCGAT AGTCGTAGTG GGGGACGTGA AGGACGTTCC
GACCGTTTTG AACGTGATGG ACGAAGCGGG CGCGACGATC GTGGAGGACG TGATGAGCGT
TCAGCACCTC GCAAACGGGG ACGGAGTGAA GTGTATGGCG AAGAGCCAAA AGATCGCTAC
CGCCTTGAAG TTGGTAGCAC GCATGGCGTT AAAGCAGGCA ACATTCTTGG TGCTATTCTT
AACGAAGCAG GCTTAGCTCC CGAATCCGTT GGACATATTT CCATCAGCGA CACCTACACC
ACCATTGAGC TACCAAAGCA GATGCCCGAT ACCATGTTCC ATGAGTTGCG CAAAATTCGC
GTATGCGGAC GCCAACTTCG CCTTTCTCGC ATGGAAGAGC ATGAAGGTGG ACACAGCACC
CATAGCTCAC ATGGCACAGG AGCCTATGGC GGTGGTGCTA AAAAAAGCTT TCGTAAGCCA
AACAAAAGCG CAAACGATGA AGGTGAATTT TTTGCGGGAT TTAAAAAAAA GCGTAAGGGA
TAG
 
Protein sequence
MSEQQLPLEN NFFSLQLPEL LMKALEEVGY ESPTPIQAQT IPFLLAGRDV LGQAQTGTGK 
TAAFALPILA SIDIQQAEPQ ALVLAPTREL AIQVAEAFQR YAEYLKGFHV VPIYGGQDYG
IQFRMLRRGV QVVVGTPGRV MDHIRRGSLN LTHLKTLVLD EADEMLRMGF IDDVEWILEQ
TPAGRQVALF SATMPPPIRR IAQKYLDQPA EVTIQTKTTT VDTIRQRYWV VGGSHKLDIL
TRILEVEPFD GMIIFSRTKT MTIELAEKLQ ARGYAAAALN GDMPQNQRER TIEQLKNGNI
NIVVATDVAA RGLDVERISH VVNYDIPSDT ESYVHRIGRT GRAGRAGDAI LFVAPREKNM
LYAIEKATRS RIEQMVLPTT EVINNKRIAK FNQRISDTIA AEDLGFFTRM IEQYCNEHNV
PMLDAAAALA SLVQGETPLL LADKPERSRS SERDSYGSSR DRGFEREGRD SRSGGREGRS
DRFERDGRSG RDDRGGRDER SAPRKRGRSE VYGEEPKDRY RLEVGSTHGV KAGNILGAIL
NEAGLAPESV GHISISDTYT TIELPKQMPD TMFHELRKIR VCGRQLRLSR MEEHEGGHST
HSSHGTGAYG GGAKKSFRKP NKSANDEGEF FAGFKKKRKG